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INSTALL report for SANTA on malbec2

This page was generated on 2019-10-16 12:02:26 -0400 (Wed, 16 Oct 2019).

Package 1453/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SANTA 2.22.0
Alex J. Cornish
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/SANTA
Branch: RELEASE_3_9
Last Commit: b28cc79
Last Changed Date: 2019-05-02 11:53:41 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: SANTA
Version: 2.22.0
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL SANTA
StartedAt: 2019-10-15 18:27:25 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 18:27:36 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 10.8 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL SANTA
###
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘SANTA’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c computenetK_fewzeros.c -o computenetK_fewzeros.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c computenetK_manyzeros.c -o computenetK_manyzeros.o
computenetK_manyzeros.c: In function ‘computenetK_manyzeros’:
computenetK_manyzeros.c:29:24: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
     p_which_vw_nonzero = R_alloc(n_nonzero_vertices, sizeof(int));
                        ^
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c computenodeAUK.c -o computenodeAUK.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c computeweights.c -o computeweights.o
gcc -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o SANTA.so computenetK_fewzeros.o computenetK_manyzeros.o computenodeAUK.o computeweights.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-SANTA/00new/SANTA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SANTA)