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INSTALL report for RefNet on tokay2

This page was generated on 2019-10-16 12:29:54 -0400 (Wed, 16 Oct 2019).

Package 1349/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RefNet 1.20.0
Paul Shannon
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/RefNet
Branch: RELEASE_3_9
Last Commit: 1e5ca4a
Last Changed Date: 2019-05-02 11:53:47 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RefNet
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/RefNet_1.20.0.tar.gz && rm -rf RefNet.buildbin-libdir && mkdir RefNet.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RefNet.buildbin-libdir RefNet_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL RefNet_1.20.0.zip && rm RefNet_1.20.0.tar.gz RefNet_1.20.0.zip
StartedAt: 2019-10-15 21:02:02 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 21:02:37 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 35.0 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/RefNet_1.20.0.tar.gz && rm -rf RefNet.buildbin-libdir && mkdir RefNet.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RefNet.buildbin-libdir RefNet_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL RefNet_1.20.0.zip && rm RefNet_1.20.0.tar.gz RefNet_1.20.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 92266  100 92266    0     0  1553k      0 --:--:-- --:--:-- --:--:-- 1732k

install for i386

* installing *source* package 'RefNet' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
replacing previous import 'IRanges::desc' by 'plyr::desc' when loading 'PSICQUIC' 
** help
*** installing help indices
  converting help for package 'RefNet'
    finding HTML links ... done
    RefNet-class                            html  
    detectDuplicateInteractions             html  
    interactions                            html  
    pickBestFromDupGroup                    html  
    providerClasses                         html  
    providers                               html  
    pubmedAbstract                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'IRanges::desc' by 'plyr::desc' when loading 'PSICQUIC'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'IRanges::desc' by 'plyr::desc' when loading 'PSICQUIC'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RefNet' ...
** testing if installed package can be loaded
Warning: replacing previous import 'IRanges::desc' by 'plyr::desc' when loading 'PSICQUIC'
* MD5 sums
packaged installation of 'RefNet' as RefNet_1.20.0.zip
* DONE (RefNet)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'RefNet' successfully unpacked and MD5 sums checked