Qiang Hu
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/Rcwl |
| Branch: RELEASE_3_9 |
| Last Commit: f581a9e |
| Last Changed Date: 2019-10-11 15:06:25 -0400 (Fri, 11 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:43:26 -0400 (Wed, 16 Oct 2019).
| Package 1332/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Rcwl 1.0.14 Qiang Hu
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | ERROR | [ ERROR ] | skipped | skipped | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: Rcwl |
| Version: 1.0.14 |
| Command: chmod a+r Rcwl -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Rcwl |
| StartedAt: 2019-10-16 01:25:03 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 01:28:33 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 210.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r Rcwl -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Rcwl
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* checking for file 'Rcwl/DESCRIPTION' ... OK
* preparing 'Rcwl':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
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* installing *source* package 'Rcwl' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Rcwl'
finding HTML links ... done
InputArrayParam html
InputParam html
InputParamList html
OutputArrayParam html
OutputParam html
OutputParamList html
Rcwl html
Step html
cwlParam-methods html
cwlParam html
cwlShiny html
cwlStepParam html
plotCWL html
plus-cwlStepParam-stepParam-method html
readCWL html
runCWL html
runCWLBatch html
runs html
short html
stepInParam html
stepInParamList html
stepParam html
stepParamList html
steps html
writeCWL html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
/usr/bin/which: no cwltool in (/cygdrive/c/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64:/cygdrive/c/Users/biocbuild/bbs-3.9-bioc/R/bin/x64:/cygdrive/c/Rtools/bin:/cygdrive/c/Rtools/mingw_32/bin:/cygdrive/c/Rtools/mingw_64/bin:/usr/bin:/cygdrive/c/Python27:/cygdrive/c/Python27/Scripts:/cygdrive/c/Windows/system32:/cygdrive/c/Windows:/cygdrive/c/Windows/System32/Wbem:/cygdrive/c/Windows/System32/WindowsPowerShell/v1.0:/cygdrive/c/Program Files (x86)/Pandoc:/cygdrive/c/Program Files/Git/cmd:/cygdrive/c/ProgramData/Oracle/Java/javapath:/cygdrive/c/Program Files/TortoiseSVN/bin:/cygdrive/c/Program Files/gs/gs9.20/bin:/cygdrive/c/Perl64/site/bin:/cygdrive/c/Perl64/bin:/cygdrive/c/ClustalO:/cygdrive/c/gtkmm64/bin:/cygdrive/c/Program Files/CMake/bin:/cygdrive/c/Program Files/ggobi:/cygdrive/c/Program Files (x86)/ggobi:/cygdrive/c/Program Files/MiKTeX 2.9/miktex/bin/x64:/cygdrive/c/Program Files/Git LFS)
Warning in system("which cwltool", intern = TRUE) :
running command 'which cwltool' had status 1
Error: package or namespace load failed for 'Rcwl':
.onLoad failed in loadNamespace() for 'Rcwl', details:
call: fun(libname, pkgname)
error: cwltool is not found, Please install cwltool first!
https://github.com/common-workflow-language/cwltool#install
Error: loading failed
Execution halted
ERROR: loading failed
* removing 'C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp2pwlhl/Rinst13a81673f6e/Rcwl'
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ERROR: package installation failed