Package: Pi

Version: 1.12.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:Pi.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings Pi_1.12.0.tar.gz

StartedAt: 2019-10-16 03:55:41 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 04:01:44 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 363.0 seconds

RetCode: 0

Status:  OK

CheckDir: Pi.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:Pi.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings Pi_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/Pi.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Pi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Pi’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Pi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL Pi
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘Pi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Pi)

name	user	system	elapsed
cTarget	0	0	0
dTarget	0.000	0.000	0.001
eGSEA	0	0	0
eTarget	0.000	0.000	0.001
pNode	0	0	0
pPerf	0.001	0.000	0.000
sGS	0	0	0
sTarget	0	0	0
xContour	0.03	0.00	0.03
xCorrelation	0	0	0
xGSEAbarplot	0	0	0
xGSEAconciser	0	0	0
xGSEAdotplot	0.000	0.000	0.001
xGSsimulator	0	0	0
xMLcaret	0	0	0
xMLcompare	0	0	0
xMLdensity	0	0	0
xMLdotplot	0	0	0
xMLfeatureplot	0.000	0.000	0.001
xMLglmnet	0	0	0
xMLparameters	0.001	0.000	0.000
xMLrandomforest	0	0	0
xMLrename	0	0	0
xMLzoom	0.000	0.000	0.001
xPier	0	0	0
xPierABF	0	0	0
xPierABFheatmap	0	0	0
xPierAnno	0	0	0
xPierCor	0	0	0
xPierCross	0.001	0.000	0.000
xPierEvidence	0	0	0
xPierGRs	0	0	0
xPierGSEA	0.000	0.000	0.001
xPierGenes	0	0	0
xPierKEGG	0.001	0.000	0.000
xPierManhattan	0.000	0.000	0.001
xPierMatrix	0	0	0
xPierPathways	0.001	0.000	0.000
xPierROCR	0.000	0.001	0.000
xPierSNPs	0	0	0
xPierSNPsAdv	0	0	0
xPierSNPsAdvABF	0	0	0
xPierSNPsConsensus	0	0	0
xPierSubnet	0.000	0.000	0.001
xPierTrack	0	0	0
xPierTrackAdv	0	0	0
xPredictCompare	0	0	0
xPredictROCR	0	0	0
xRWR	0.000	0.001	0.001
xVisEvidence	0.001	0.000	0.001
xVisEvidenceAdv	0	0	0