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INSTALL report for PGSEA on tokay2

This page was generated on 2019-10-16 12:21:11 -0400 (Wed, 16 Oct 2019).

Package 1200/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PGSEA 1.58.0
Karl Dykema
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/PGSEA
Branch: RELEASE_3_9
Last Commit: a89e31f
Last Changed Date: 2019-05-02 11:53:07 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: PGSEA
Version: 1.58.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/PGSEA_1.58.0.tar.gz && rm -rf PGSEA.buildbin-libdir && mkdir PGSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PGSEA.buildbin-libdir PGSEA_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL PGSEA_1.58.0.zip && rm PGSEA_1.58.0.tar.gz PGSEA_1.58.0.zip
StartedAt: 2019-10-15 19:08:59 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:09:52 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 53.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/PGSEA_1.58.0.tar.gz && rm -rf PGSEA.buildbin-libdir && mkdir PGSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PGSEA.buildbin-libdir PGSEA_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL PGSEA_1.58.0.zip && rm PGSEA_1.58.0.tar.gz PGSEA_1.58.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 98  957k   98  944k    0     0  9368k      0 --:--:-- --:--:-- --:--:-- 9833k
100  957k  100  957k    0     0  9455k      0 --:--:-- --:--:-- --:--:-- 9969k

install for i386

* installing *source* package 'PGSEA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PGSEA'
    finding HTML links ... done
    GOLUBmcs                                html  
    PGSEA                                   html  
    VAIgsc                                  html  
    VAImcs                                  html  
    aggregateExprs                          html  
    convertSmc                              html  
    editSmc                                 html  
    go2smc                                  html  
    kegg2smc                                html  
    nbEset                                  html  
    readGmt                                 html  
    readSmc                                 html  
    scanSmc                                 html  
    smcPlot                                 html  
    writeGmt                                html  
    writeSmc                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PGSEA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PGSEA' as PGSEA_1.58.0.zip
* DONE (PGSEA)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'PGSEA' successfully unpacked and MD5 sums checked