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INSTALL report for OmicCircos on tokay2

This page was generated on 2019-10-16 12:28:09 -0400 (Wed, 16 Oct 2019).

Package 1129/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OmicCircos 1.22.0
Ying Hu
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/OmicCircos
Branch: RELEASE_3_9
Last Commit: 0fe9c9e
Last Changed Date: 2019-05-02 11:53:43 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: OmicCircos
Version: 1.22.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/OmicCircos_1.22.0.tar.gz && rm -rf OmicCircos.buildbin-libdir && mkdir OmicCircos.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmicCircos.buildbin-libdir OmicCircos_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL OmicCircos_1.22.0.zip && rm OmicCircos_1.22.0.tar.gz OmicCircos_1.22.0.zip
StartedAt: 2019-10-15 20:18:33 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:19:28 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 54.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/OmicCircos_1.22.0.tar.gz && rm -rf OmicCircos.buildbin-libdir && mkdir OmicCircos.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmicCircos.buildbin-libdir OmicCircos_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL OmicCircos_1.22.0.zip && rm OmicCircos_1.22.0.tar.gz OmicCircos_1.22.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  111k  100  111k    0     0   757k      0 --:--:-- --:--:-- --:--:--  785k

install for i386

* installing *source* package 'OmicCircos' ...
** using staged installation
** R
** data
** demo
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'OmicCircos'
    finding HTML links ... done
    OmicCircos                              html  
    TCGA.BC.cnv.2k.60                       html  
    TCGA.BC.fus                             html  
    TCGA.BC.gene.exp.2k.60                  html  
    TCGA.BC.sample60                        html  
    TCGA.BC_Her2_cnv_exp                    html  
    TCGA.PAM50_genefu_hg18                  html  
    UCSC.chr.colors                         html  
    UCSC.hg18                               html  
    UCSC.hg18.chr                           html  
    UCSC.hg19                               html  
    UCSC.hg19.chr                           html  
    UCSC.mm10                               html  
    UCSC.mm10.chr                           html  
    UCSC.mm9                                html  
    UCSC.mm9.chr                            html  
    circos                                  html  
    segAnglePo-methods                      html  
    segAnglePo                              html  
    sim.circos                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'OmicCircos' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OmicCircos' as OmicCircos_1.22.0.zip
* DONE (OmicCircos)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'OmicCircos' successfully unpacked and MD5 sums checked