Gabriela Merino
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/NBSplice |
| Branch: RELEASE_3_9 |
| Last Commit: 814adf6 |
| Last Changed Date: 2019-05-22 14:39:19 -0400 (Wed, 22 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:15:22 -0400 (Wed, 16 Oct 2019).
| Package 1087/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| NBSplice 1.2.1 Gabriela Merino
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: NBSplice |
| Version: 1.2.1 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:NBSplice.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings NBSplice_1.2.1.tar.gz |
| StartedAt: 2019-10-16 03:31:17 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 03:32:37 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 80.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: NBSplice.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:NBSplice.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings NBSplice_1.2.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/NBSplice.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘NBSplice/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘NBSplice’ version ‘1.2.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘NBSplice’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
IsoDataSet-class 13.326 1.305 5.449
IsoDataSet-core 12.387 1.291 4.289
IsoDataSet-NBTest 12.220 1.122 4.609
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
NBSplice.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL NBSplice ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘NBSplice’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NBSplice)
NBSplice.Rcheck/tests/runTests.Rout
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("NBSplice")
Loading required package: BiocParallel
Loading required package: ggplot2
RUNIT TEST PROTOCOL -- Wed Oct 16 03:32:33 2019
***********************************************
Number of test functions: 20
Number of errors: 0
Number of failures: 0
1 Test Suite :
NBSplice RUnit Tests - 20 test functions, 0 errors, 0 failures
Number of test functions: 20
Number of errors: 0
Number of failures: 0
>
>
> proc.time()
user system elapsed
3.929 0.216 4.314
NBSplice.Rcheck/NBSplice-Ex.timings
| name | user | system | elapsed | |
| IsoDataSet-NBTest | 12.220 | 1.122 | 4.609 | |
| IsoDataSet-buildLowExpIdx | 0.976 | 0.212 | 0.585 | |
| IsoDataSet-class | 13.326 | 1.305 | 5.449 | |
| IsoDataSet-constructor | 0.181 | 0.048 | 0.302 | |
| IsoDataSet-core | 12.387 | 1.291 | 4.289 | |
| IsoDataSet-getters | 0.477 | 0.011 | 0.489 | |
| IsoDataSet-initialize | 0.244 | 0.056 | 0.383 | |
| IsoDataSet-print | 0.402 | 0.133 | 0.174 | |
| IsoDataSet-show | 0.134 | 0.016 | 0.149 | |
| NBSpliceRes-GetDSGenes | 0.016 | 0.000 | 0.016 | |
| NBSpliceRes-GetDSResults | 0.016 | 0.000 | 0.016 | |
| NBSpliceRes-GetGeneResults | 0.014 | 0.004 | 0.019 | |
| NBSpliceRes-class | 0.037 | 0.000 | 0.037 | |
| NBSpliceRes-constructor | 0.022 | 0.000 | 0.022 | |
| NBSpliceRes-getters | 0.021 | 0.000 | 0.021 | |
| NBSpliceRes-initialize | 0.013 | 0.000 | 0.013 | |
| NBSpliceRes-plotGeneResults | 0.048 | 0.000 | 0.048 | |
| NBSpliceRes-plotRatiosDisp | 0.025 | 0.000 | 0.025 | |
| NBSpliceRes-plotVolcano | 0.023 | 0.000 | 0.023 | |
| NBSpliceRes-print | 0.017 | 0.004 | 0.020 | |
| NBSpliceRes-show | 0.019 | 0.000 | 0.019 | |
| totalGeneCounts | 0.155 | 0.040 | 0.268 | |