Marc Johannes
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/MCRestimate |
| Branch: RELEASE_3_9 |
| Last Commit: d4017a6 |
| Last Changed Date: 2019-05-02 11:53:11 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:22:17 -0400 (Wed, 16 Oct 2019).
| Package 937/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MCRestimate 2.40.0 Marc Johannes
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: MCRestimate |
| Version: 2.40.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MCRestimate.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings MCRestimate_2.40.0.tar.gz |
| StartedAt: 2019-10-16 04:58:57 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 05:00:44 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 107.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MCRestimate.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MCRestimate.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings MCRestimate_2.40.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/MCRestimate.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MCRestimate/DESCRIPTION' ... OK
* this is package 'MCRestimate' version '2.40.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MCRestimate' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
'ROC' 'genefilter' 'gpls'
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: 'golubEsets'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
ClassifierBuild.default MCRestimate.default plot.MCRestimate
predict.PLR
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
MCRestimate.default : my.balanced.folds: warning in
get("balanced.folds", en = asNamespace("pamr")): partial argument
match of 'en' to 'envir'
important.variable.names : : warning in median(x, na =
TRUE): partial argument match of 'na' to 'na.rm'
important.variable.names : : warning in var(x, na = TRUE):
partial argument match of 'na' to 'na.rm'
plot.MCRestimate: warning in layout(c(1, 2), height = c(5, 1)): partial
argument match of 'height' to 'heights'
GPLS.wrap: no visible global function definition for 'glpls1a'
varSel.AUC : AUC.rfc: no visible global function definition for 'AUC'
varSel.AUC : AUC.rfc: no visible global function definition for
'rocdemo.sca'
varSel.AUC : AUC.rfc: no visible binding for global variable
'dxrule.sca'
varSel.highest.t.stat: no visible global function definition for
'rowttests'
varSel.highest.t.stat.eSRG: no visible global function definition for
'rowttests'
Undefined global functions or variables:
AUC dxrule.sca glpls1a rocdemo.sca rowttests
* checking Rd files ... NOTE
prepare_Rd: PLR.Rd:19: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 5 NOTEs
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/MCRestimate.Rcheck/00check.log'
for details.
MCRestimate.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/MCRestimate_2.40.0.tar.gz && rm -rf MCRestimate.buildbin-libdir && mkdir MCRestimate.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MCRestimate.buildbin-libdir MCRestimate_2.40.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL MCRestimate_2.40.0.zip && rm MCRestimate_2.40.0.tar.gz MCRestimate_2.40.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'MCRestimate' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MCRestimate'
finding HTML links ... done
ClassifierBuild html
MCRconfusion html
MCRestimate html
MCRestimateMerge html
PLR html
SVM.OVA.wrap html
class.factor.format html
geneReduction html
important.variable.names html
indVotes html
intersectList html
plot.MCRestimate html
replace.NA html
select.NA.elements html
wrapper.fkt html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MCRestimate' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MCRestimate' as MCRestimate_2.40.0.zip
* DONE (MCRestimate)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'MCRestimate' successfully unpacked and MD5 sums checked
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MCRestimate.Rcheck/examples_i386/MCRestimate-Ex.timings
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MCRestimate.Rcheck/examples_x64/MCRestimate-Ex.timings
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