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INSTALL report for MAST on tokay2

This page was generated on 2019-10-16 12:36:59 -0400 (Wed, 16 Oct 2019).

Package 924/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MAST 1.10.0
Andrew McDavid
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/MAST
Branch: RELEASE_3_9
Last Commit: 7223e4f
Last Changed Date: 2019-05-02 11:54:04 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MAST
Version: 1.10.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/MAST_1.10.0.tar.gz && rm -rf MAST.buildbin-libdir && mkdir MAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MAST.buildbin-libdir MAST_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL MAST_1.10.0.zip && rm MAST_1.10.0.tar.gz MAST_1.10.0.zip
StartedAt: 2019-10-15 20:38:32 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:40:13 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 100.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/MAST_1.10.0.tar.gz && rm -rf MAST.buildbin-libdir && mkdir MAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MAST.buildbin-libdir MAST_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL MAST_1.10.0.zip && rm MAST_1.10.0.tar.gz MAST_1.10.0.zip
###
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100 5935k  100 5935k    0     0  26.2M      0 --:--:-- --:--:-- --:--:-- 27.0M

install for i386

* installing *source* package 'MAST' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MAST'
    finding HTML links ... done
    BayesGLMlike-class                      html  
    CovFromBoots                            html  
    Drop                                    html  
    FromFlatDF                              html  
    FromMatrix                              html  
    GLMlike-class                           html  
    GSEATests-class                         html  
    Hypothesis                              html  
    LMERlike-class                          html  
    LMlike-class                            html  
    LRT                                     html  
    MAST-package                            html  
    SceToSingleCellAssay                    html  
    ZlmFit-class                            html  
    applyFlat                               html  
    bootVcov1                               html  
    cData                                   html  
    finding level-2 HTML links ... done

    calcZ                                   html  
    colData-set-SingleCellAssay-DataFrame-method
                                            html  
    collectResiduals                        html  
    computeEtFromCt                         html  
    convertMASTClassicToSingleCellAssay     html  
    defaultAssay                            html  
    defaultPrior                            html  
    dof                                     html  
    ebayes                                  html  
    expavg                                  html  
    fData-methods                           html  
    featureData-methods                     html  
    filterLowExpressedGenes                 html  
    fit                                     html  
    freq                                    html  
    getConcordance                          html  
    getwellKey                              html  
    gseaAfterBoot                           html  
    hushWarning                             html  
    impute                                  html  
    influence.bayesglm                      html  
    invlogit                                html  
    logFC                                   html  
    logmean                                 html  
    lrTest-ZlmFit-character-method          html  
    lrTest                                  html  
    maits-dataset                           html  
    mast_filter                             html  
    melt.SingleCellAssay                    html  
    model.matrix-set                        html  
    model.matrix                            html  
    myBiplot                                html  
    pbootVcov1                              html  
    plot.thresholdSCRNACountMatrix          html  
    plotSCAConcordance                      html  
    plotlrt                                 html  
    predict.ZlmFit                          html  
    predicted_sig-dataset                   html  
    primerAverage                           html  
    print.summaryZlmFit                     html  
    read.fluidigm                           html  
    removeResponse                          html  
    rstandard.bayesglm                      html  
    se.coef                                 html  
    show                                    html  
    split-SingleCellAssay-character-method
                                            html  
    stat_ell                                html  
    subset-SingleCellAssay-method           html  
    summarize                               html  
    summary-GSEATests-method                html  
    summary-ZlmFit-method                   html  
    summary.thresholdSCRNACountMatrix       html  
    thresholdSCRNACountMatrix               html  
    vbeta-dataset                           html  
    vbetaFA-dataset                         html  
    waldTest-ZlmFit-matrix-method           html  
    waldTest                                html  
    xform                                   html  
    zlm                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MAST' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MAST' as MAST_1.10.0.zip
* DONE (MAST)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'MAST' successfully unpacked and MD5 sums checked