Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJ[K]LMNOPQRSTUVWXYZ

INSTALL report for KEGGgraph on tokay2

This page was generated on 2019-10-16 12:22:18 -0400 (Wed, 16 Oct 2019).

Package 854/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGgraph 1.44.0
Jitao David Zhang
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/KEGGgraph
Branch: RELEASE_3_9
Last Commit: 2c24e8e
Last Changed Date: 2019-05-02 11:53:11 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: KEGGgraph
Version: 1.44.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/KEGGgraph_1.44.0.tar.gz && rm -rf KEGGgraph.buildbin-libdir && mkdir KEGGgraph.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=KEGGgraph.buildbin-libdir KEGGgraph_1.44.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL KEGGgraph_1.44.0.zip && rm KEGGgraph_1.44.0.tar.gz KEGGgraph_1.44.0.zip
StartedAt: 2019-10-15 18:47:43 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 18:49:19 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 95.6 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/KEGGgraph_1.44.0.tar.gz && rm -rf KEGGgraph.buildbin-libdir && mkdir KEGGgraph.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=KEGGgraph.buildbin-libdir KEGGgraph_1.44.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL KEGGgraph_1.44.0.zip && rm KEGGgraph_1.44.0.tar.gz KEGGgraph_1.44.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  929k  100  929k    0     0  6343k      0 --:--:-- --:--:-- --:--:-- 6637k

install for i386

* installing *source* package 'KEGGgraph' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'KEGGgraph'
    finding HTML links ... done
    KEGGEdge-class                          html  
    KEGGEdgeSubType-class                   html  
    KEGGEdgeSubtype                         html  
    KEGGGraphics-class                      html  
    KEGGGroup-class                         html  
    KEGGNode-class                          html  
    KEGGPathway-class                       html  
    KEGGPathwayInfo-class                   html  
    KEGGReaction-class                      html  
    KEGGpathway2Graph                       html  
    KEGGpathway2reactionGraph               html  
    expandKEGGNode                          html  
    expandKEGGPathway                       html  
    getDisplayName-methods                  html  
    getEntryID-methods                      html  
    getKEGGID-methods                       html  
    getKEGGgeneLink-methods                 html  
    getKEGGnodeData                         html  
    getKGMLurl                              html  
    getName-methods                         html  
    getNamedElement                         html  
    getPathwayInfo-methods                  html  
    getReactions-methods                    html  
    getRgraphvizEdgeNames                   html  
    getSubtype-methods                      html  
    getTitle-methods                        html  
    getType-methods                         html  
    getValue-methods                        html  
    graphDensity                            html  
    isHomoList                              html  
    kgmlFileName2PathwayName                html  
    mergeGraphs                             html  
    mergeKEGGgraphs                         html  
    neighborhood                            html  
    parseEntry                              html  
    parseGraphics                           html  
    parseKGML                               html  
    parseKGML2DataFrame                     html  
    parseKGML2Graph                         html  
    parseKGMLexpandMaps                     html  
    parsePathwayInfo                        html  
    parseReaction                           html  
    parseRelation                           html  
    parseSubType                            html  
    plotKEGGgraph                           html  
    pvalue2asterisk                         html  
    queryKEGGsubgraph                       html  
    randomSubGraph                          html  
    splitKEGGgroup                          html  
    subGraphByNodeType                      html  
    subKEGGgraph                            html  
    subtypeDisplay-methods                  html  
    top                                     html  
    translateKEGGID2GeneID                  html  
    translateKEGGgraph                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'KEGGgraph' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KEGGgraph' as KEGGgraph_1.44.0.zip
* DONE (KEGGgraph)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'KEGGgraph' successfully unpacked and MD5 sums checked