Minoo Ashtiani
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/IMMAN |
| Branch: RELEASE_3_9 |
| Last Commit: 602109b |
| Last Changed Date: 2019-05-02 11:54:11 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 13:02:07 -0400 (Wed, 16 Oct 2019).
| Package 805/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| IMMAN 1.4.0 Minoo Ashtiani
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: IMMAN |
| Version: 1.4.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:IMMAN.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings IMMAN_1.4.0.tar.gz |
| StartedAt: 2019-10-16 03:48:17 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 04:00:18 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 721.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: IMMAN.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:IMMAN.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings IMMAN_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/IMMAN.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘IMMAN/DESCRIPTION’ ... OK * this is package ‘IMMAN’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘IMMAN’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE IMMAN: no visible binding for global variable ‘tem’ IMMAN :: no visible binding for global variable ‘tem’ Undefined global functions or variables: tem * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed IMMAN 159.913 8.659 240.724 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.9-bioc/meat/IMMAN.Rcheck/00check.log’ for details.
IMMAN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL IMMAN ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘IMMAN’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IMMAN)
IMMAN.Rcheck/tests/testthat.Rout
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(IMMAN)
>
> test_check("IMMAN")
trying URL 'http://string.uzh.ch/permanent/string/10/protein_aliases/6239__protein_aliases_tf.tsv.gz'
Content type 'application/x-gzip' length 3866324 bytes (3.7 MB)
==================================================
downloaded 3.7 MB
trying URL 'http://string.uzh.ch/permanent/string/10/proteins/6239__proteins.tsv.gz'
Content type 'application/x-gzip' length 792419 bytes (773 KB)
==================================================
downloaded 773 KB
trying URL 'http://string.uzh.ch/permanent/string/10/protein_aliases/7227__protein_aliases_tf.tsv.gz'
Content type 'application/x-gzip' length 4062637 bytes (3.9 MB)
==================================================
downloaded 3.9 MB
trying URL 'http://string.uzh.ch/permanent/string/10/proteins/7227__proteins.tsv.gz'
Content type 'application/x-gzip' length 648541 bytes (633 KB)
==================================================
downloaded 633 KB
trying URL 'http://string.uzh.ch/permanent/string/10/protein_links/6239__protein_links.tsv.gz'
Content type 'application/x-gzip' length 26272827 bytes (25.1 MB)
==================================================
downloaded 25.1 MB
trying URL 'http://string.uzh.ch/permanent/string/10/protein_links/7227__protein_links.tsv.gz'
Content type 'application/x-gzip' length 18188738 bytes (17.3 MB)
==================================================
downloaded 17.3 MB
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 2 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
127.095 7.726 174.488
IMMAN.Rcheck/IMMAN-Ex.timings
| name | user | system | elapsed | |
| Celegance | 0.018 | 0.005 | 0.025 | |
| FruitFly | 0.003 | 0.002 | 0.004 | |
| H.sapiens | 0.005 | 0.003 | 0.008 | |
| IMMAN | 159.913 | 8.659 | 240.724 | |
| R.norvegicus | 0.005 | 0.003 | 0.008 | |