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CHECK report for HilbertCurve on celaya2

This page was generated on 2019-10-16 12:56:07 -0400 (Wed, 16 Oct 2019).

Package 758/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertCurve 1.14.0
Zuguang Gu
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/HilbertCurve
Branch: RELEASE_3_9
Last Commit: 8a9aa6b
Last Changed Date: 2019-05-02 11:53:56 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: HilbertCurve
Version: 1.14.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HilbertCurve_1.14.0.tar.gz
StartedAt: 2019-10-16 03:38:46 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 03:42:45 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 239.3 seconds
RetCode: 0
Status:  OK 
CheckDir: HilbertCurve.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HilbertCurve_1.14.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/HilbertCurve.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                      user system elapsed
hc_layer-HilbertCurve-method        23.014  1.521  25.776
hc_layer-GenomicHilbertCurve-method 16.108  0.563  16.801
GenomicHilbertCurve                 13.822  0.317  15.826
hc_png-HilbertCurve-method           7.481  0.462   7.955
hc_map-GenomicHilbertCurve-method    6.694  0.132   7.033
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

HilbertCurve.Rcheck/00install.out

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### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL HilbertCurve
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘HilbertCurve’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘HilbertCurve.Rmd’ 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertCurve)

Tests output

HilbertCurve.Rcheck/tests/test-all.Rout


R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
══ testthat results  ═══════════════════════════════════════════════════════════
[ OK: 8 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
  6.031   0.656   6.662 

Example timings

HilbertCurve.Rcheck/HilbertCurve-Ex.timings

nameusersystemelapsed
GenomicHilbertCurve-class0.0000.0000.002
GenomicHilbertCurve13.822 0.31715.826
HilbertCurve-class000
HilbertCurve0.6940.0450.741
default_overlay0.0010.0010.001
hc_centered_text-HilbertCurve-method0.1590.0020.162
hc_layer-GenomicHilbertCurve-method16.108 0.56316.801
hc_layer-HilbertCurve-method23.014 1.52125.776
hc_layer-dispatch000
hc_level-HilbertCurve-method0.0490.0050.059
hc_map-GenomicHilbertCurve-method6.6940.1327.033
hc_normal_points-HilbertCurve-method0.0000.0010.001
hc_offset-HilbertCurve-method0.0170.0010.018
hc_png-HilbertCurve-method7.4810.4627.955
hc_points-GenomicHilbertCurve-method0.7000.0200.721
hc_points-HilbertCurve-method1.0560.0141.072
hc_points-dispatch000
hc_polygon-GenomicHilbertCurve-method0.8310.0310.996
hc_polygon-HilbertCurve-method0.2100.0100.239
hc_polygon-dispatch0.0010.0000.000
hc_rect-GenomicHilbertCurve-method0.4790.0090.489
hc_rect-HilbertCurve-method0.1110.0050.116
hc_rect-dispatch0.0000.0010.001
hc_segmented_points-HilbertCurve-method0.0010.0010.000
hc_segments-GenomicHilbertCurve-method0.8910.0180.909
hc_segments-HilbertCurve-method0.1130.0040.118
hc_segments-dispatch000
hc_text-GenomicHilbertCurve-method0.3270.0080.335
hc_text-HilbertCurve-method0.1390.0070.146
hc_text-dispatch0.0000.0000.001
is_white000
show-HilbertCurve-method0.0160.0010.018
unzoom-HilbertCurve-method0.0140.0010.017
zoom-HilbertCurve-method0.0140.0010.016