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INSTALL report for HiCcompare on tokay2

This page was generated on 2019-10-16 12:38:57 -0400 (Wed, 16 Oct 2019).

Package 754/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiCcompare 1.6.0
John Stansfield
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/HiCcompare
Branch: RELEASE_3_9
Last Commit: 6b93164
Last Changed Date: 2019-05-02 11:54:07 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: HiCcompare
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/HiCcompare_1.6.0.tar.gz && rm -rf HiCcompare.buildbin-libdir && mkdir HiCcompare.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCcompare.buildbin-libdir HiCcompare_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL HiCcompare_1.6.0.zip && rm HiCcompare_1.6.0.tar.gz HiCcompare_1.6.0.zip
StartedAt: 2019-10-15 20:12:25 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:13:42 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 77.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/HiCcompare_1.6.0.tar.gz && rm -rf HiCcompare.buildbin-libdir && mkdir HiCcompare.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCcompare.buildbin-libdir HiCcompare_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL HiCcompare_1.6.0.zip && rm HiCcompare_1.6.0.tar.gz HiCcompare_1.6.0.zip
###
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100 3203k  100 3203k    0     0  33.1M      0 --:--:-- --:--:-- --:--:-- 35.5M

install for i386

* installing *source* package 'HiCcompare' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to 'ceiling' 
** help
*** installing help indices
  converting help for package 'HiCcompare'
    finding HTML links ... done
    HMEC.chr10                              html  
    HMEC.chr22                              html  
    HiCcompare-package                      html  
    KRnorm                                  html  
    MA_norm                                 html  
    MD.plot1                                html  
    MD.plot2                                html  
    NHEK.chr10                              html  
    NHEK.chr22                              html  
    SCN                                     html  
    brain_table                             html  
    centromere_locations                    html  
    cooler                                  html  
    cooler2sparse                           html  
    create.hic.table                        html  
    filter_params                           html  
    full2sparse                             html  
    get_CNV                                 html  
    hg19_blacklist                          html  
    hg38_blacklist                          html  
    hic_compare                             html  
    hic_diff                                html  
    hic_loess                               html  
    hic_simulate                            html  
    hicpro2bedpe                            html  
    hmec.IS                                 html  
    make_InteractionSet                     html  
    manhattan_plot                          html  
    nhek.IS                                 html  
    remove_centromere                       html  
    sim.other.methods                       html  
    sim_matrix                              html  
    sparse2full                             html  
    split_centromere                        html  
    total_sum                               html  
    visualize_pvals                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'HiCcompare' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HiCcompare' as HiCcompare_1.6.0.zip
* DONE (HiCcompare)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'HiCcompare' successfully unpacked and MD5 sums checked