Peter Hickey
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/GenomicTuples |
| Branch: RELEASE_3_9 |
| Last Commit: 46d9853 |
| Last Changed Date: 2019-09-30 20:37:12 -0400 (Mon, 30 Sep 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:31:31 -0400 (Wed, 16 Oct 2019).
| Package 661/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GenomicTuples 1.18.1 Peter Hickey
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GenomicTuples |
| Version: 1.18.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GenomicTuples_1.18.1.tar.gz && rm -rf GenomicTuples.buildbin-libdir && mkdir GenomicTuples.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicTuples.buildbin-libdir GenomicTuples_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GenomicTuples_1.18.1.zip && rm GenomicTuples_1.18.1.tar.gz GenomicTuples_1.18.1.zip |
| StartedAt: 2019-10-15 19:57:30 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:58:45 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 75.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GenomicTuples_1.18.1.tar.gz && rm -rf GenomicTuples.buildbin-libdir && mkdir GenomicTuples.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicTuples.buildbin-libdir GenomicTuples_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GenomicTuples_1.18.1.zip && rm GenomicTuples_1.18.1.tar.gz GenomicTuples_1.18.1.zip
###
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install for i386
* installing *source* package 'GenomicTuples' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c IPD.cpp -o IPD.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c allTuplesSorted.cpp -o allTuplesSorted.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c pcompareGTuples.cpp -o pcompareGTuples.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GenomicTuples.dll tmp.def IPD.o RcppExports.o allTuplesSorted.o pcompareGTuples.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/GenomicTuples.buildbin-libdir/00LOCK-GenomicTuples/00new/GenomicTuples/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GenomicTuples'
finding HTML links ... done
GTuples-class html
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GTuples-comparison html
finding level-2 HTML links ... done
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GTuplesList-class html
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GenomicTuples-package html
dot-GT2DT html
dot-IPDCpp html
dot-allTuplesSortedCpp html
dot-findEqual.GTuples html
dot-matrixDiffWithRecycling html
dot-pcompareGTuplesCpp html
dot-zero_range html
findOverlaps-methods html
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illdefined-methods html
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intra-tuple-methods html
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nearest-methods html
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Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpWQmAxq/R.INSTALL1dac426b4a26/GenomicTuples/man/nearest-methods.Rd:150: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpWQmAxq/R.INSTALL1dac426b4a26/GenomicTuples/man/nearest-methods.Rd:165: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpWQmAxq/R.INSTALL1dac426b4a26/GenomicTuples/man/nearest-methods.Rd:166: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpWQmAxq/R.INSTALL1dac426b4a26/GenomicTuples/man/nearest-methods.Rd:167: file link 'IPosRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpWQmAxq/R.INSTALL1dac426b4a26/GenomicTuples/man/nearest-methods.Rd:168: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
tuples-squeezers html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpWQmAxq/R.INSTALL1dac426b4a26/GenomicTuples/man/tuples-squeezers.Rd:13: file link 'granges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpWQmAxq/R.INSTALL1dac426b4a26/GenomicTuples/man/tuples-squeezers.Rd:14: file link 'grglist' in package 'GenomicRanges' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GenomicTuples' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c IPD.cpp -o IPD.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c allTuplesSorted.cpp -o allTuplesSorted.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c pcompareGTuples.cpp -o pcompareGTuples.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GenomicTuples.dll tmp.def IPD.o RcppExports.o allTuplesSorted.o pcompareGTuples.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/GenomicTuples.buildbin-libdir/GenomicTuples/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicTuples' as GenomicTuples_1.18.1.zip
* DONE (GenomicTuples)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'GenomicTuples' successfully unpacked and MD5 sums checked