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INSTALL report for GeneAccord on tokay2

This page was generated on 2019-10-16 12:42:03 -0400 (Wed, 16 Oct 2019).

Package 621/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneAccord 1.2.0
Ariane L. Moore
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/GeneAccord
Branch: RELEASE_3_9
Last Commit: fc5763a
Last Changed Date: 2019-05-02 11:54:12 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GeneAccord
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GeneAccord_1.2.0.tar.gz && rm -rf GeneAccord.buildbin-libdir && mkdir GeneAccord.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneAccord.buildbin-libdir GeneAccord_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GeneAccord_1.2.0.zip && rm GeneAccord_1.2.0.tar.gz GeneAccord_1.2.0.zip
StartedAt: 2019-10-15 21:13:15 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 21:16:06 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 171.2 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GeneAccord_1.2.0.tar.gz && rm -rf GeneAccord.buildbin-libdir && mkdir GeneAccord.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneAccord.buildbin-libdir GeneAccord_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GeneAccord_1.2.0.zip && rm GeneAccord_1.2.0.tar.gz GeneAccord_1.2.0.zip
###
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100 2736k  100 2736k    0     0  34.5M      0 --:--:-- --:--:-- --:--:-- 37.6M

install for i386

* installing *source* package 'GeneAccord' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GeneAccord'
    finding HTML links ... done
    GeneAccord                              html  
    all_genes_tbl                           html  
    avg_rates_m                             html  
    build_null_test_statistic               html  
    clone_tbl_all_pats_all_trees            html  
    compute_rates_clon_excl                 html  
    compute_test_stat_avg_rate              html  
    convert_ensembl_to_reactome_pw_tbl      html  
    create_ensembl_gene_tbl_hg              html  
    create_tbl_ent_clones                   html  
    create_tbl_tree_collection              html  
    ecdf_list                               html  
    ecdf_lr_test_clon_excl_avg_rate         html  
    ensembl_to_hgnc                         html  
    ensembl_to_reactome                     html  
    ensg_reactome_path_map                  html  
    ensmusg_reactome_path_map               html  
    extract_num_clones_tbl                  html  
    generate_ecdf_test_stat                 html  
    generate_test_stat_hist                 html  
    get_hist_clon_excl                      html  
    get_hist_clon_excl_this_pat_this_pair   html  
    get_rate_diff_branch_ent_pair           html  
    heatmap_clones_gene_pat                 html  
    hgnc_to_ensembl                         html  
    is_diff_branch_ent_pair                 html  
    list_of_clon_excl_all_pats              html  
    list_of_num_trees_all_pats              html  
    map_pairs_to_hgnc_symbols               html  
    merge_clones_identical_ents             html  
    pairs_in_patients_hist                  html  
    plot_ecdf_test_stat                     html  
    plot_rates_clon_excl                    html  
    take_pairs_and_get_patients             html  
    vis_pval_distr_num_pat                  html  
    write_res_pairs_to_disk                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GeneAccord' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneAccord' as GeneAccord_1.2.0.zip
* DONE (GeneAccord)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'GeneAccord' successfully unpacked and MD5 sums checked