Bahman Afsari
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/GSReg |
| Branch: RELEASE_3_9 |
| Last Commit: cb59430 |
| Last Changed Date: 2019-05-02 11:53:48 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:53:34 -0400 (Wed, 16 Oct 2019).
| Package 729/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GSReg 1.18.0 Bahman Afsari
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] | |
| Package: GSReg |
| Version: 1.18.0 |
| Command: rm -rf GSReg.buildbin-libdir && mkdir GSReg.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GSReg_1.18.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GSReg.buildbin-libdir |
| StartedAt: 2019-10-16 08:44:05 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 08:44:47 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 41.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GSReg_1.18.0.tgz |
| PackageFileSize: 360.7 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GSReg.buildbin-libdir && mkdir GSReg.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GSReg_1.18.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GSReg.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GSReg.buildbin-libdir GSReg_1.18.0.tar.gz' >>>>>>> * installing *source* package ‘GSReg’ ... ** using staged installation ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c kendallTauDistance.cc -o kendallTauDistance.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c kendallTauDistanceFromTemp.cc -o kendallTauDistanceFromTemp.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c kendallTauDistanceRestricted.cc -o kendallTauDistanceRestricted.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c nij.cc -o nij.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c vect2compC.cc -o vect2compC.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GSReg.so init.o kendallTauDistance.o kendallTauDistanceFromTemp.o kendallTauDistanceRestricted.o nij.o vect2compC.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/GSReg.buildbin-libdir/00LOCK-GSReg/00new/GSReg/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GSReg) >>>>>>> >>>>>>> FIXING LINKS FOR GSReg.buildbin-libdir/GSReg/libs//GSReg.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "GSReg.buildbin-libdir/GSReg/libs//GSReg.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "GSReg.buildbin-libdir/GSReg/libs//GSReg.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "GSReg.buildbin-libdir/GSReg/libs//GSReg.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "GSReg.buildbin-libdir/GSReg/libs//GSReg.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "GSReg.buildbin-libdir/GSReg/libs//GSReg.so"