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INSTALL report for GSRI on tokay2

This page was generated on 2019-10-16 12:23:51 -0400 (Wed, 16 Oct 2019).

Package 730/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSRI 2.32.0
Julian Gehring
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/GSRI
Branch: RELEASE_3_9
Last Commit: 52d778f
Last Changed Date: 2019-05-02 11:53:14 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GSRI
Version: 2.32.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GSRI_2.32.0.tar.gz && rm -rf GSRI.buildbin-libdir && mkdir GSRI.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GSRI.buildbin-libdir GSRI_2.32.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GSRI_2.32.0.zip && rm GSRI_2.32.0.tar.gz GSRI_2.32.0.zip
StartedAt: 2019-10-15 20:46:08 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:47:00 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 52.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GSRI_2.32.0.tar.gz && rm -rf GSRI.buildbin-libdir && mkdir GSRI.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GSRI.buildbin-libdir GSRI_2.32.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GSRI_2.32.0.zip && rm GSRI_2.32.0.tar.gz GSRI_2.32.0.zip
###
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install for i386

* installing *source* package 'GSRI' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GSRI'
    finding HTML links ... done
    GSRI-internal                           html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/GSRI-internal.Rd:60: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/GSRI-internal.Rd:61: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/GSRI-internal.Rd:62: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/GSRI-internal.Rd:66: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/GSRI-internal.Rd:67: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/GSRI-internal.Rd:68: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/GSRI-internal.Rd:69: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
    GSRI-package                            html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/GSRI-package.Rd:80: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/GSRI-package.Rd:81: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/GSRI-package.Rd:82: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/GSRI-package.Rd:86: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/GSRI-package.Rd:87: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/GSRI-package.Rd:88: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/GSRI-package.Rd:89: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
    Gsri-class                              html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/Gsri-class.Rd:144: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/Gsri-class.Rd:145: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/Gsri-class.Rd:146: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/Gsri-class.Rd:150: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/Gsri-class.Rd:151: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/Gsri-class.Rd:152: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/Gsri-class.Rd:153: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
    export                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/export.Rd:49: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/export.Rd:50: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/export.Rd:51: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/export.Rd:55: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/export.Rd:56: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/export.Rd:57: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/export.Rd:58: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
    get-methods                             html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/get-methods.Rd:78: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/get-methods.Rd:79: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/get-methods.Rd:80: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/get-methods.Rd:84: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/get-methods.Rd:85: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/get-methods.Rd:86: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/get-methods.Rd:87: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
    gsri                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/gsri.Rd:228: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/gsri.Rd:229: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/gsri.Rd:230: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/gsri.Rd:234: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/gsri.Rd:235: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/gsri.Rd:236: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/gsri.Rd:237: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
    plot                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/plot.Rd:91: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/plot.Rd:92: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/plot.Rd:93: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/plot.Rd:97: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/plot.Rd:98: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/plot.Rd:99: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/plot.Rd:100: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
    read-functions                          html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/read-functions.Rd:63: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/read-functions.Rd:64: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/read-functions.Rd:65: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/read-functions.Rd:69: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/read-functions.Rd:70: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/read-functions.Rd:71: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/read-functions.Rd:72: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
    sortGsri                                html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/sortGsri.Rd:62: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/sortGsri.Rd:63: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/sortGsri.Rd:64: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/sortGsri.Rd:68: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/sortGsri.Rd:69: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/sortGsri.Rd:70: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/sortGsri.Rd:71: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
    test-functions                          html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/test-functions.Rd:97: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/test-functions.Rd:98: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/test-functions.Rd:99: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/test-functions.Rd:103: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/test-functions.Rd:104: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/test-functions.Rd:105: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpgvQO5d/R.INSTALL1d343aab25c5/GSRI/man/test-functions.Rd:106: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GSRI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSRI' as GSRI_2.32.0.zip
* DONE (GSRI)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'GSRI' successfully unpacked and MD5 sums checked