Back to Multiple platform build/check report for BioC 3.9
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

INSTALL report for GOstats on tokay2

This page was generated on 2019-10-16 12:19:22 -0400 (Wed, 16 Oct 2019).

Package 701/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GOstats 2.50.0
Bioconductor Package Maintainer
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/GOstats
Branch: RELEASE_3_9
Last Commit: ee13f84
Last Changed Date: 2019-05-02 11:53:02 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GOstats
Version: 2.50.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GOstats_2.50.0.tar.gz && rm -rf GOstats.buildbin-libdir && mkdir GOstats.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOstats.buildbin-libdir GOstats_2.50.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GOstats_2.50.0.zip && rm GOstats_2.50.0.tar.gz GOstats_2.50.0.zip
StartedAt: 2019-10-15 19:50:47 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:51:36 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 48.8 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GOstats_2.50.0.tar.gz && rm -rf GOstats.buildbin-libdir && mkdir GOstats.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOstats.buildbin-libdir GOstats_2.50.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GOstats_2.50.0.zip && rm GOstats_2.50.0.tar.gz GOstats_2.50.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1571k  100 1571k    0     0  13.2M      0 --:--:-- --:--:-- --:--:-- 14.0M

install for i386

* installing *source* package 'GOstats' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GOstats'
    finding HTML links ... done
    GOHyperGResult-class                    html  
    GOstats-defunct                         html  
    GOstats-package                         html  
    Ndists                                  html  
    OBOHyperGResult-class                   html  
    compCorrGraph                           html  
    compGdist                               html  
    hyperGTest                              html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8Qiumo/R.INSTALL1f2848f25400/GOstats/man/hyperGTest.Rd:47: file link 'geneGoHyperGeoTest' in package 'Category' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8Qiumo/R.INSTALL1f2848f25400/GOstats/man/hyperGTest.Rd:48: file link 'geneKeggHyperGeoTest' in package 'Category' does not exist and so has been treated as a topic
    idx2dimnames                            html  
    makeGOGraph                             html  
    notConn                                 html  
    oneGOGraph                              html  
    probeSetSummary                         html  
    shortestPath                            html  
    simLL                                   html  
    termGraphs                              html  
    triadCensus                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GOstats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GOstats' as GOstats_2.50.0.zip
* DONE (GOstats)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'GOstats' successfully unpacked and MD5 sums checked