Back to Multiple platform build/check report for BioC 3.9
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

INSTALL report for GOfuncR on malbec2

This page was generated on 2019-10-16 12:12:51 -0400 (Wed, 16 Oct 2019).

Package 693/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GOfuncR 1.4.0
Steffi Grote
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/GOfuncR
Branch: RELEASE_3_9
Last Commit: 2f633dc
Last Changed Date: 2019-05-02 11:54:10 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GOfuncR
Version: 1.4.0
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL GOfuncR
StartedAt: 2019-10-15 18:33:33 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 18:36:12 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 159.1 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL GOfuncR
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘GOfuncR’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c binom_categorytest.cc -o binom_categorytest.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c binom_randset.cc -o binom_randset.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c blocks.cpp -o blocks.o
blocks.cpp: In function ‘std::set rannum_blocks(std::vector, std::vector, const std::map, int>&, std::vector)’:
blocks.cpp:30:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int j=0; j < candidate_bed.size(); j++){
                 ~~^~~~~~~~~~~~~~~~~~~~~~
blocks.cpp:34:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
    for (int k=0; k < background.size(); k++){
                  ~~^~~~~~~~~~~~~~~~~~~
blocks.cpp:68:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
    for (int g=0; g rannum_genelen(int, const std::map, int>&, std::vector, long int)’:
ran_genelen.cpp:19:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  while (random_numbers.size() < n_candidate) {
         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c read_bed.cpp -o read_bed.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c roll.cpp -o roll.o
roll.cpp: In function ‘std::set rannum_roll(std::vector, std::vector, const std::map, int>&, std::vector)’:
roll.cpp:30:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for (int j=0; j < candidate_bed.size(); j++){
                ~~^~~~~~~~~~~~~~~~~~~~~~
roll.cpp:36:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i=0; i < background_bed.size(); i++){
                 ~~^~~~~~~~~~~~~~~~~~~~~~~
roll.cpp:92:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
    for (int g=0; g