Back to Multiple platform build/check report for BioC 3.9
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

INSTALL report for GIGSEA on tokay2

This page was generated on 2019-10-16 12:41:39 -0400 (Wed, 16 Oct 2019).

Package 679/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GIGSEA 1.2.0
Shijia Zhu
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/GIGSEA
Branch: RELEASE_3_9
Last Commit: 91bc1cd
Last Changed Date: 2019-05-02 11:54:12 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GIGSEA
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GIGSEA_1.2.0.tar.gz && rm -rf GIGSEA.buildbin-libdir && mkdir GIGSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GIGSEA.buildbin-libdir GIGSEA_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GIGSEA_1.2.0.zip && rm GIGSEA_1.2.0.tar.gz GIGSEA_1.2.0.zip
StartedAt: 2019-10-15 18:57:21 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 18:57:59 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 38.4 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GIGSEA_1.2.0.tar.gz && rm -rf GIGSEA.buildbin-libdir && mkdir GIGSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GIGSEA.buildbin-libdir GIGSEA_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GIGSEA_1.2.0.zip && rm GIGSEA_1.2.0.tar.gz GIGSEA_1.2.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1091k  100 1091k    0     0  7487k      0 --:--:-- --:--:-- --:--:-- 7849k

install for i386

* installing *source* package 'GIGSEA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GIGSEA'
    finding HTML links ... done
    MSigDB.KEGG.Pathway                     html  
    MSigDB.TF                               html  
    MSigDB.miRNA                            html  
    TargetScan.miRNA                        html  
    dataFrame2geneSet                       html  
    geneSet2Net                             html  
    geneSet2sparseMatrix                    html  
    gmt2geneSet                             html  
    heart.metaXcan                          html  
    matrixPval                              html  
    orderedIntersect                        html  
    permutationMultipleLm                   html  
    permutationMultipleLmMatrix             html  
    permutationSimpleLm                     html  
    permutationSimpleLmMatrix               html  
    runGIGSEA                               html  
    weightedGSEA                            html  
    weightedMultipleLm                      html  
    weightedPearsonCorr                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GIGSEA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GIGSEA' as GIGSEA_1.2.0.zip
* DONE (GIGSEA)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'GIGSEA' successfully unpacked and MD5 sums checked