Back to Multiple platform build/check report for BioC 3.9
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for DropletUtils on malbec2

This page was generated on 2019-10-16 12:12:59 -0400 (Wed, 16 Oct 2019).

Package 465/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DropletUtils 1.4.3
Aaron Lun
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/DropletUtils
Branch: RELEASE_3_9
Last Commit: c74dbae
Last Changed Date: 2019-08-06 22:55:31 -0400 (Tue, 06 Aug 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DropletUtils
Version: 1.4.3
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL DropletUtils
StartedAt: 2019-10-15 19:00:39 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:02:23 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 104.6 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL DropletUtils
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘DropletUtils’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/dqrng/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c compute_multinom.cpp -o compute_multinom.o
compute_multinom.cpp: In instantiation of ‘SEXPREC* compute_multinom_internal(SEXP, SEXP, SEXP) [with V = Rcpp::Vector<13>; MAT = beachmat::lin_matrix >; SEXP = SEXPREC*]’:
compute_multinom.cpp:73:105:   required from here
compute_multinom.cpp:41:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (ambient.size()!=NR) {
         ~~~~~~~~~~~~~~^~~~
compute_multinom.cpp: In instantiation of ‘SEXPREC* compute_multinom_internal(SEXP, SEXP, SEXP) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; MAT = beachmat::lin_matrix >; SEXP = SEXPREC*]’:
compute_multinom.cpp:75:105:   required from here
compute_multinom.cpp:41:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from compute_multinom.cpp:5:0:
/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include/beachmat/utils/const_column.h: In instantiation of ‘Rcpp::traits::storage_type<13>::type* beachmat::const_column::get_indices() [with M = beachmat::lin_matrix >; Rcpp::Vector<13>::iterator = int*; Rcpp::traits::storage_type<13>::type = int]’:
compute_multinom.cpp:54:18:   required from ‘SEXPREC* compute_multinom_internal(SEXP, SEXP, SEXP) [with V = Rcpp::Vector<13>; MAT = beachmat::lin_matrix >; SEXP = SEXPREC*]’
compute_multinom.cpp:73:105:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include/beachmat/utils/const_column.h:66:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (ref->get_nrow() > indices.size()) {
/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include/beachmat/utils/const_column.h: In instantiation of ‘Rcpp::traits::storage_type<13>::type* beachmat::const_column::get_indices() [with M = beachmat::lin_matrix >; Rcpp::Vector<13>::iterator = int*; Rcpp::traits::storage_type<13>::type = int]’:
compute_multinom.cpp:54:18:   required from ‘SEXPREC* compute_multinom_internal(SEXP, SEXP, SEXP) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; MAT = beachmat::lin_matrix >; SEXP = SEXPREC*]’
compute_multinom.cpp:75:105:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include/beachmat/utils/const_column.h:66:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/dqrng/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c downsample_counts.cpp -o downsample_counts.o
downsample_counts.cpp: In function ‘bool check_downsampling_mode(size_t, Rcpp::NumericVector, Rcpp::LogicalVector)’:
downsample_counts.cpp:99:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (prop.size()!=ncells) {
             ~~~~~~~~~~~^~~~~~~~
downsample_counts.cpp: In function ‘SEXPREC* downsample_runs(SEXP, SEXP, SEXP, SEXP)’:
downsample_counts.cpp:209:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (nmolecules!=read_vec.size()) {
         ~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from downsample_counts.cpp:5:0:
/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include/beachmat/utils/const_column.h: In instantiation of ‘Rcpp::traits::storage_type<13>::type* beachmat::const_column::get_indices() [with M = beachmat::lin_matrix >; Rcpp::Vector<13>::iterator = int*; Rcpp::traits::storage_type<13>::type = int]’:
downsample_counts.cpp:171:17:   required from ‘Rcpp::RObject downsample_matrix_internal(Rcpp::RObject, Rcpp::NumericVector, Rcpp::LogicalVector) [with V = Rcpp::Vector<13>; M = beachmat::lin_matrix >; O = beachmat::lin_output >; Rcpp::RObject = Rcpp::RObject_Impl; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::LogicalVector = Rcpp::Vector<10, Rcpp::PreserveStorage>]’
downsample_counts.cpp:189:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include/beachmat/utils/const_column.h:66:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (ref->get_nrow() > indices.size()) {
/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include/beachmat/utils/const_column.h: In instantiation of ‘Rcpp::traits::storage_type<13>::type* beachmat::const_column::get_indices() [with M = beachmat::lin_matrix >; Rcpp::Vector<13>::iterator = int*; Rcpp::traits::storage_type<13>::type = int]’:
downsample_counts.cpp:171:17:   required from ‘Rcpp::RObject downsample_matrix_internal(Rcpp::RObject, Rcpp::NumericVector, Rcpp::LogicalVector) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; M = beachmat::lin_matrix >; O = beachmat::lin_output >; Rcpp::RObject = Rcpp::RObject_Impl; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::LogicalVector = Rcpp::Vector<10, Rcpp::PreserveStorage>]’
downsample_counts.cpp:193:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include/beachmat/utils/const_column.h:66:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/dqrng/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c encode_sequences.cpp -o encode_sequences.o
encode_sequences.cpp: In function ‘SEXPREC* encode_sequences(SEXP)’:
encode_sequences.cpp:11:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (size_t i=0; i instead.
 BOOST_HEADER_DEPRECATED("");
                                                           ^
montecarlo_pval.cpp: In function ‘SEXPREC* montecarlo_pval(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
montecarlo_pval.cpp:95:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 if (chosen >= ngenes) {
                     ~~~~~~~^~~~~~~~~
montecarlo_pval.cpp:111:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             if (higher