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INSTALL report for DSS on tokay2

This page was generated on 2019-10-16 12:26:35 -0400 (Wed, 16 Oct 2019).

Package 468/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DSS 2.32.0
Hao Wu
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/DSS
Branch: RELEASE_3_9
Last Commit: ffb502d
Last Changed Date: 2019-05-02 11:53:36 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DSS
Version: 2.32.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DSS_2.32.0.tar.gz && rm -rf DSS.buildbin-libdir && mkdir DSS.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DSS.buildbin-libdir DSS_2.32.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DSS_2.32.0.zip && rm DSS_2.32.0.tar.gz DSS_2.32.0.zip
StartedAt: 2019-10-15 20:29:48 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:31:04 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 75.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DSS_2.32.0.tar.gz && rm -rf DSS.buildbin-libdir && mkdir DSS.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DSS.buildbin-libdir DSS_2.32.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DSS_2.32.0.zip && rm DSS_2.32.0.tar.gz DSS_2.32.0.zip
###
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100  570k  100  570k    0     0  8955k      0 --:--:-- --:--:-- --:--:--  9.7M

install for i386

* installing *source* package 'DSS' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c compute_var_smooth.c -o compute_var_smooth.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c filter.c -o filter.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c nitem.c -o nitem.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o DSS.dll tmp.def compute_var_smooth.o filter.o nitem.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DSS.buildbin-libdir/00LOCK-DSS/00new/DSS/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DSS'
    finding HTML links ... done
    DMLfit.multiFactor                      html  
    DMLtest                                 html  
    DMLtest.multiFactor                     html  
    DSS-package                             html  
    DSS.DE                                  html  
    RRBS                                    html  
    SeqCountSet-class                       html  
    finding level-2 HTML links ... done

    callDML                                 html  
    callDMR                                 html  
    design                                  html  
    dispersion                              html  
    estDispersion                           html  
    estNormFactors                          html  
    makeBSseqData                           html  
    normalizationFactor                     html  
    seqData                                 html  
    showOneDMR                              html  
    waldTest                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DSS' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c compute_var_smooth.c -o compute_var_smooth.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c filter.c -o filter.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c nitem.c -o nitem.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o DSS.dll tmp.def compute_var_smooth.o filter.o nitem.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DSS.buildbin-libdir/DSS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DSS' as DSS_2.32.0.zip
* DONE (DSS)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'DSS' successfully unpacked and MD5 sums checked