Back to Multiple platform build/check report for BioC 3.9
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for DEXSeq on tokay2

This page was generated on 2019-10-16 12:25:13 -0400 (Wed, 16 Oct 2019).

Package 428/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEXSeq 1.30.0
Alejandro Reyes
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/DEXSeq
Branch: RELEASE_3_9
Last Commit: f25cec3
Last Changed Date: 2019-05-02 11:53:26 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DEXSeq
Version: 1.30.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DEXSeq_1.30.0.tar.gz && rm -rf DEXSeq.buildbin-libdir && mkdir DEXSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEXSeq.buildbin-libdir DEXSeq_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DEXSeq_1.30.0.zip && rm DEXSeq_1.30.0.tar.gz DEXSeq_1.30.0.zip
StartedAt: 2019-10-15 20:11:16 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:12:19 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 62.8 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DEXSeq_1.30.0.tar.gz && rm -rf DEXSeq.buildbin-libdir && mkdir DEXSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEXSeq.buildbin-libdir DEXSeq_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DEXSeq_1.30.0.zip && rm DEXSeq_1.30.0.tar.gz DEXSeq_1.30.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 53855    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 53855  100 53855    0     0   106k      0 --:--:-- --:--:-- --:--:--  108k

install for i386

* installing *source* package 'DEXSeq' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DEXSeq'
    finding HTML links ... done
    DEXSeq-defunct                          html  
    DEXSeq                                  html  
    DEXSeqDataSet                           html  
    DEXSeqHTML                              html  
    DEXSeqResults                           html  
    accessors                               html  
    counts                                  html  
    estimateDispersions                     html  
    estimateExonFoldChanges                 html  
    estimateSizeFactors                     html  
    methods-gr                              html  
    otherMethods                            html  
    perGeneQValue                           html  
    plotDEXSeq                              html  
    plotDispEsts                            html  
    plotMA                                  html  
    testForDEU                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DEXSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DEXSeq' as DEXSeq_1.30.0.zip
* DONE (DEXSeq)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'DEXSeq' successfully unpacked and MD5 sums checked