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CHECK report for ComplexHeatmap on tokay2

This page was generated on 2019-10-16 12:32:52 -0400 (Wed, 16 Oct 2019).

Package 331/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ComplexHeatmap 2.0.0
Zuguang Gu
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/ComplexHeatmap
Branch: RELEASE_3_9
Last Commit: 97863d8
Last Changed Date: 2019-05-02 11:53:53 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ComplexHeatmap
Version: 2.0.0
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ComplexHeatmap.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings ComplexHeatmap_2.0.0.tar.gz
StartedAt: 2019-10-16 02:52:12 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 02:55:13 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 180.6 seconds
RetCode: 0
Status:  OK  
CheckDir: ComplexHeatmap.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ComplexHeatmap.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings ComplexHeatmap_2.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/ComplexHeatmap.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ComplexHeatmap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ComplexHeatmap' version '2.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ComplexHeatmap' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
anno_horizon 7.03   0.03    7.07
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
anno_horizon  5.8   0.06    5.86
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'test-all.R'
 OK
** running tests for arch 'x64' ...
  Running 'test-all.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

ComplexHeatmap.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ComplexHeatmap_2.0.0.tar.gz && rm -rf ComplexHeatmap.buildbin-libdir && mkdir ComplexHeatmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ComplexHeatmap.buildbin-libdir ComplexHeatmap_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ComplexHeatmap_2.0.0.zip && rm ComplexHeatmap_2.0.0.tar.gz ComplexHeatmap_2.0.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1295k  100 1295k    0     0  5152k      0 --:--:-- --:--:-- --:--:-- 5310k

install for i386

* installing *source* package 'ComplexHeatmap' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ComplexHeatmap'
    finding HTML links ... done
    AdditiveUnit-class                      html  
    AdditiveUnit                            html  
    AnnotationFunction-class                html  
    AnnotationFunction                      html  
    ColorMapping-class                      html  
    ColorMapping                            html  
    ComplexHeatmap-package                  html  
    Extract.AnnotationFunction              html  
    Extract.Heatmap                         html  
    Extract.HeatmapAnnotation               html  
    Extract.HeatmapList                     html  
    Extract.SingleAnnotation                html  
    Extract.comb_mat                        html  
    Heatmap-class                           html  
    Heatmap                                 html  
    HeatmapAnnotation-class                 html  
    HeatmapAnnotation                       html  
    HeatmapList-class                       html  
    HeatmapList                             html  
    Legend                                  html  
    Legends-class                           html  
    Legends                                 html  
    SingleAnnotation-class                  html  
    SingleAnnotation                        html  
    UpSet                                   html  
    add.AdditiveUnit                        html  
    add_heatmap-Heatmap-method              html  
    add_heatmap-HeatmapAnnotation-method    html  
    add_heatmap-HeatmapList-method          html  
    add_heatmap-dispatch                    html  
    adjust_dend_by_x                        html  
    adjust_heatmap_list-HeatmapList-method
                                            html  
    anno_barplot                            html  
    anno_block                              html  
    anno_boxplot                            html  
    anno_density                            html  
    anno_empty                              html  
    anno_histogram                          html  
    anno_horizon                            html  
    anno_image                              html  
    anno_joyplot                            html  
    anno_lines                              html  
    anno_link                               html  
    anno_mark                               html  
    anno_oncoprint_barplot                  html  
    anno_points                             html  
    anno_simple                             html  
    anno_summary                            html  
    anno_text                               html  
    anno_zoom                               html  
    annotation_axis_grob                    html  
    annotation_legend_size-HeatmapList-method
                                            html  
    c.HeatmapAnnotation                     html  
    cluster_within_group                    html  
    color_mapping_legend-ColorMapping-method
                                            html  
    columnAnnotation                        html  
    column_dend-Heatmap-method              html  
    column_dend-HeatmapList-method          html  
    column_dend-dispatch                    html  
    column_order-Heatmap-method             html  
    column_order-HeatmapList-method         html  
    column_order-dispatch                   html  
    comb_degree                             html  
    comb_name                               html  
    comb_size                               html  
    component_height-Heatmap-method         html  
    component_height-HeatmapList-method     html  
    component_height-dispatch               html  
    component_width-Heatmap-method          html  
    component_width-HeatmapList-method      html  
    component_width-dispatch                html  
    copy_all-AnnotationFunction-method      html  
    copy_all-SingleAnnotation-method        html  
    copy_all-dispatch                       html  
    decorate_annotation                     html  
    decorate_column_dend                    html  
    decorate_column_names                   html  
    decorate_column_title                   html  
    decorate_dend                           html  
    decorate_dimnames                       html  
    decorate_heatmap_body                   html  
    decorate_row_dend                       html  
    decorate_row_names                      html  
    decorate_row_title                      html  
    decorate_title                          html  
    default_axis_param                      html  
    default_get_type                        html  
    dend_heights                            html  
    dend_xy                                 html  
    dendrogramGrob                          html  
    densityHeatmap                          html  
    dim.Heatmap                             html  
    dist2                                   html  
    draw-AnnotationFunction-method          html  
    draw-Heatmap-method                     html  
    draw-HeatmapAnnotation-method           html  
    draw-HeatmapList-method                 html  
    draw-Legends-method                     html  
    draw-SingleAnnotation-method            html  
    draw-dispatch                           html  
    draw_annotation-Heatmap-method          html  
    draw_annotation_legend-HeatmapList-method
                                            html  
    draw_dend-Heatmap-method                html  
    draw_dimnames-Heatmap-method            html  
    draw_heatmap_body-Heatmap-method        html  
    draw_heatmap_legend-HeatmapList-method
                                            html  
    draw_heatmap_list-HeatmapList-method    html  
    draw_title-Heatmap-method               html  
    draw_title-HeatmapList-method           html  
    draw_title-dispatch                     html  
    extract_comb                            html  
    getXY_in_parent_vp                      html  
    get_color_mapping_list-HeatmapAnnotation-method
                                            html  
    get_legend_param_list-HeatmapAnnotation-method
                                            html  
    grid.annotation_axis                    html  
    grid.boxplot                            html  
    grid.dendrogram                         html  
    grid.draw.Legends                       html  
    heatmap_legend_size-HeatmapList-method
                                            html  
    height.AnnotationFunction               html  
    height.Heatmap                          html  
    height.HeatmapAnnotation                html  
    height.HeatmapList                      html  
    height.Legends                          html  
    height.SingleAnnotation                 html  
    heightAssign.AnnotationFunction         html  
    heightAssign.HeatmapAnnotation          html  
    heightAssign.SingleAnnotation           html  
    heightDetails.annotation_axis           html  
    heightDetails.legend                    html  
    heightDetails.legend_body               html  
    heightDetails.packed_legends            html  
    ht_global_opt                           html  
    ht_opt                                  html  
    is_abs_unit                             html  
    length.HeatmapAnnotation                html  
    length.HeatmapList                      html  
    list_components                         html  
    list_to_matrix                          html  
    make_column_cluster-Heatmap-method      html  
    make_comb_mat                           html  
    make_layout-Heatmap-method              html  
    make_layout-HeatmapList-method          html  
    make_layout-dispatch                    html  
    make_row_cluster-Heatmap-method         html  
    map_to_colors-ColorMapping-method       html  
    max_text_height                         html  
    max_text_width                          html  
    merge_dendrogram                        html  
    names.HeatmapAnnotation                 html  
    names.HeatmapList                       html  
    namesAssign.HeatmapAnnotation           html  
    ncol.Heatmap                            html  
    nobs.AnnotationFunction                 html  
    nobs.HeatmapAnnotation                  html  
    nobs.SingleAnnotation                   html  
    normalize_comb_mat                      html  
    nrow.Heatmap                            html  
    oncoPrint                               html  
    order.comb_mat                          html  
    packLegend                              html  
    pct_v_pct                               html  
    pindex                                  html  
    prepare-Heatmap-method                  html  
    print.comb_mat                          html  
    re_size-HeatmapAnnotation-method        html  
    restore_matrix                          html  
    rowAnnotation                           html  
    row_anno_barplot                        html  
    row_anno_boxplot                        html  
    row_anno_density                        html  
    row_anno_histogram                      html  
    row_anno_link                           html  
    row_anno_points                         html  
    row_anno_text                           html  
    row_dend-Heatmap-method                 html  
    row_dend-HeatmapList-method             html  
    row_dend-dispatch                       html  
    row_order-Heatmap-method                html  
    row_order-HeatmapList-method            html  
    row_order-dispatch                      html  
    set_component_height-Heatmap-method     html  
    set_component_width-Heatmap-method      html  
    set_name                                html  
    set_size                                html  
    show-AnnotationFunction-method          html  
    show-ColorMapping-method                html  
    show-Heatmap-method                     html  
    show-HeatmapAnnotation-method           html  
    show-HeatmapList-method                 html  
    show-SingleAnnotation-method            html  
    show-dispatch                           html  
    size.AnnotationFunction                 html  
    size.HeatmapAnnotation                  html  
    size.SingleAnnotation                   html  
    sizeAssign.AnnotationFunction           html  
    sizeAssign.HeatmapAnnotation            html  
    sizeAssign.SingleAnnotation             html  
    smartAlign2                             html  
    str.comb_mat                            html  
    subset_gp                               html  
    subset_matrix_by_row                    html  
    subset_vector                           html  
    summary.Heatmap                         html  
    summary.HeatmapList                     html  
    t.comb_mat                              html  
    test_alter_fun                          html  
    unify_mat_list                          html  
    upset_right_annotation                  html  
    upset_top_annotation                    html  
    width.AnnotationFunction                html  
    width.Heatmap                           html  
    width.HeatmapAnnotation                 html  
    width.HeatmapList                       html  
    width.Legends                           html  
    width.SingleAnnotation                  html  
    widthAssign.AnnotationFunction          html  
    widthAssign.HeatmapAnnotation           html  
    widthAssign.SingleAnnotation            html  
    widthDetails.annotation_axis            html  
    widthDetails.legend                     html  
    widthDetails.legend_body                html  
    widthDetails.packed_legends             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ComplexHeatmap' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ComplexHeatmap' as ComplexHeatmap_2.0.0.zip
* DONE (ComplexHeatmap)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ComplexHeatmap' successfully unpacked and MD5 sums checked

Tests output

ComplexHeatmap.Rcheck/tests_i386/test-all.Rout


R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(ComplexHeatmap)))
> 
> test_check("ComplexHeatmap")
== testthat results  ===========================================================
[ OK: 96 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
  21.53    0.37   21.89 

ComplexHeatmap.Rcheck/tests_x64/test-all.Rout


R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(ComplexHeatmap)))
> 
> test_check("ComplexHeatmap")
== testthat results  ===========================================================
[ OK: 96 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
  23.18    0.21   23.39 

Example timings

ComplexHeatmap.Rcheck/examples_i386/ComplexHeatmap-Ex.timings

nameusersystemelapsed
AdditiveUnit-class000
AdditiveUnit000
AnnotationFunction-class000
AnnotationFunction4.110.024.13
ColorMapping-class000
ColorMapping0.020.000.01
ComplexHeatmap-package000
Extract.AnnotationFunction0.010.010.04
Extract.Heatmap0.770.000.76
Extract.HeatmapAnnotation0.060.000.06
Extract.HeatmapList0.170.000.18
Extract.SingleAnnotation0.050.000.04
Extract.comb_mat000
Heatmap-class000
Heatmap000
HeatmapAnnotation-class0.020.000.02
HeatmapAnnotation000
HeatmapList-class000
HeatmapList000
Legend0.100.000.11
Legends-class000
Legends000
SingleAnnotation-class000
SingleAnnotation0.100.000.09
UpSet0.870.020.89
add.AdditiveUnit000
add_heatmap-Heatmap-method000
add_heatmap-HeatmapAnnotation-method000
add_heatmap-HeatmapList-method000
add_heatmap-dispatch000
adjust_dend_by_x0.020.010.03
adjust_heatmap_list-HeatmapList-method000
anno_barplot0.030.000.03
anno_block0.250.000.25
anno_boxplot0.050.000.05
anno_density0.480.020.50
anno_empty0.020.000.02
anno_histogram0.080.000.07
anno_horizon7.030.037.07
anno_image000
anno_joyplot0.610.000.61
anno_lines0.090.000.09
anno_link000
anno_mark0.360.000.36
anno_oncoprint_barplot000
anno_points0.010.000.02
anno_simple0.060.000.06
anno_summary0.420.020.44
anno_text0.180.000.17
anno_zoom0.560.000.57
annotation_axis_grob0.110.010.12
annotation_legend_size-HeatmapList-method000
c.HeatmapAnnotation0.060.000.06
cluster_within_group0.030.000.03
color_mapping_legend-ColorMapping-method000
columnAnnotation000
column_dend-Heatmap-method0.460.000.46
column_dend-HeatmapList-method1.010.001.01
column_dend-dispatch000
column_order-Heatmap-method0.280.000.28
column_order-HeatmapList-method0.990.000.99
column_order-dispatch000
comb_degree000
comb_name000
comb_size000
component_height-Heatmap-method000
component_height-HeatmapList-method000
component_height-dispatch000
component_width-Heatmap-method000
component_width-HeatmapList-method000
component_width-dispatch000
copy_all-AnnotationFunction-method000
copy_all-SingleAnnotation-method000
copy_all-dispatch000
decorate_annotation0.220.000.22
decorate_column_dend000
decorate_column_names000
decorate_column_title000
decorate_dend0.120.000.12
decorate_dimnames0.170.000.18
decorate_heatmap_body0.110.000.10
decorate_row_dend000
decorate_row_names000
decorate_row_title000
decorate_title0.140.000.15
default_axis_param000
default_get_type000
dend_heights000
dend_xy0.020.000.01
dendrogramGrob000
densityHeatmap1.420.021.44
dim.Heatmap000
dist2000
draw-AnnotationFunction-method000
draw-Heatmap-method000
draw-HeatmapAnnotation-method000
draw-HeatmapList-method000
draw-Legends-method0.020.000.02
draw-SingleAnnotation-method000
draw-dispatch000
draw_annotation-Heatmap-method000
draw_annotation_legend-HeatmapList-method000
draw_dend-Heatmap-method000
draw_dimnames-Heatmap-method000
draw_heatmap_body-Heatmap-method000
draw_heatmap_legend-HeatmapList-method000
draw_heatmap_list-HeatmapList-method000
draw_title-Heatmap-method000
draw_title-HeatmapList-method000
draw_title-dispatch000
extract_comb000
getXY_in_parent_vp0.010.000.01
get_color_mapping_list-HeatmapAnnotation-method000
get_legend_param_list-HeatmapAnnotation-method000
grid.annotation_axis000
grid.boxplot0.020.000.02
grid.dendrogram0.660.050.70
grid.draw.Legends0.010.000.02
heatmap_legend_size-HeatmapList-method000
height.AnnotationFunction000
height.Heatmap000
height.HeatmapAnnotation000
height.HeatmapList000
height.Legends000
height.SingleAnnotation000
heightAssign.AnnotationFunction000
heightAssign.HeatmapAnnotation0.010.000.02
heightAssign.SingleAnnotation000
heightDetails.annotation_axis000
heightDetails.legend000
heightDetails.legend_body000
heightDetails.packed_legends000
ht_global_opt000
ht_opt000
is_abs_unit000
length.HeatmapAnnotation000
length.HeatmapList000
list_components000
list_to_matrix000
make_column_cluster-Heatmap-method000
make_comb_mat000
make_layout-Heatmap-method000
make_layout-HeatmapList-method000
make_layout-dispatch000
make_row_cluster-Heatmap-method000
map_to_colors-ColorMapping-method0.020.000.02
max_text_height000
max_text_width000
merge_dendrogram0.080.000.08
names.HeatmapAnnotation0.010.000.01
names.HeatmapList000
namesAssign.HeatmapAnnotation0.020.000.02
ncol.Heatmap000
nobs.AnnotationFunction0.010.000.01
nobs.HeatmapAnnotation000
nobs.SingleAnnotation000
normalize_comb_mat000
nrow.Heatmap000
oncoPrint000
order.comb_mat000
packLegend0.080.000.08
pct_v_pct000
pindex000
prepare-Heatmap-method000
print.comb_mat000
re_size-HeatmapAnnotation-method000
restore_matrix0.420.000.42
rowAnnotation000
row_anno_barplot000
row_anno_boxplot000
row_anno_density000
row_anno_histogram000
row_anno_link000
row_anno_points000
row_anno_text000
row_dend-Heatmap-method0.250.000.25
row_dend-HeatmapList-method0.590.000.59
row_dend-dispatch000
row_order-Heatmap-method0.240.000.24
row_order-HeatmapList-method0.640.000.64
row_order-dispatch000
set_component_height-Heatmap-method000
set_component_width-Heatmap-method000
set_name000
set_size000
show-AnnotationFunction-method000
show-ColorMapping-method000
show-Heatmap-method000
show-HeatmapAnnotation-method000
show-HeatmapList-method000
show-SingleAnnotation-method000
show-dispatch000
size.AnnotationFunction0.010.000.01
size.HeatmapAnnotation000
size.SingleAnnotation000
sizeAssign.AnnotationFunction000
sizeAssign.HeatmapAnnotation000
sizeAssign.SingleAnnotation000
smartAlign20.050.030.08
str.comb_mat000
subset_gp000
subset_matrix_by_row000
subset_vector000
summary.Heatmap000
summary.HeatmapList000
t.comb_mat000
test_alter_fun0.060.000.06
unify_mat_list000
upset_right_annotation000
upset_top_annotation000
width.AnnotationFunction000
width.Heatmap000
width.HeatmapAnnotation000
width.HeatmapList000
width.Legends000
width.SingleAnnotation000
widthAssign.AnnotationFunction000
widthAssign.HeatmapAnnotation000
widthAssign.SingleAnnotation000
widthDetails.annotation_axis000
widthDetails.legend000
widthDetails.legend_body000
widthDetails.packed_legends000

ComplexHeatmap.Rcheck/examples_x64/ComplexHeatmap-Ex.timings

nameusersystemelapsed
AdditiveUnit-class000
AdditiveUnit000
AnnotationFunction-class000
AnnotationFunction3.830.013.85
ColorMapping-class000
ColorMapping000
ComplexHeatmap-package000
Extract.AnnotationFunction0.030.000.03
Extract.Heatmap0.770.000.76
Extract.HeatmapAnnotation0.080.000.08
Extract.HeatmapList0.220.020.24
Extract.SingleAnnotation0.040.000.04
Extract.comb_mat000
Heatmap-class000
Heatmap000
HeatmapAnnotation-class000
HeatmapAnnotation000
HeatmapList-class000
HeatmapList000
Legend0.130.000.12
Legends-class0.010.000.02
Legends000
SingleAnnotation-class000
SingleAnnotation0.140.000.14
UpSet0.720.000.72
add.AdditiveUnit000
add_heatmap-Heatmap-method000
add_heatmap-HeatmapAnnotation-method000
add_heatmap-HeatmapList-method000
add_heatmap-dispatch000
adjust_dend_by_x0.010.000.01
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anno_barplot0.030.000.03
anno_block0.330.000.33
anno_boxplot0.050.000.05
anno_density0.530.020.54
anno_empty0.030.000.04
anno_histogram0.110.000.10
anno_horizon5.800.065.86
anno_image000
anno_joyplot0.580.020.60
anno_lines0.090.000.09
anno_link000
anno_mark0.390.000.39
anno_oncoprint_barplot000
anno_points0.030.000.03
anno_simple0.050.000.05
anno_summary0.420.000.42
anno_text0.140.000.14
anno_zoom0.390.000.39
annotation_axis_grob0.060.010.08
annotation_legend_size-HeatmapList-method000
c.HeatmapAnnotation0.070.000.06
cluster_within_group0.030.000.03
color_mapping_legend-ColorMapping-method000
columnAnnotation000
column_dend-Heatmap-method0.400.000.41
column_dend-HeatmapList-method1.160.001.15
column_dend-dispatch000
column_order-Heatmap-method0.420.000.42
column_order-HeatmapList-method1.060.001.06
column_order-dispatch000
comb_degree000
comb_name000
comb_size000
component_height-Heatmap-method000
component_height-HeatmapList-method000
component_height-dispatch000
component_width-Heatmap-method000
component_width-HeatmapList-method000
component_width-dispatch000
copy_all-AnnotationFunction-method000
copy_all-SingleAnnotation-method000
copy_all-dispatch000
decorate_annotation0.280.000.28
decorate_column_dend000
decorate_column_names0.010.000.02
decorate_column_title000
decorate_dend0.160.000.15
decorate_dimnames0.200.000.21
decorate_heatmap_body0.130.000.12
decorate_row_dend000
decorate_row_names000
decorate_row_title000
decorate_title0.170.000.17
default_axis_param000
default_get_type000
dend_heights000
dend_xy0.020.000.02
dendrogramGrob000
densityHeatmap1.30.01.3
dim.Heatmap000
dist2000
draw-AnnotationFunction-method000
draw-Heatmap-method000
draw-HeatmapAnnotation-method000
draw-HeatmapList-method000
draw-Legends-method0.010.000.01
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draw_annotation-Heatmap-method000
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draw_dend-Heatmap-method000
draw_dimnames-Heatmap-method000
draw_heatmap_body-Heatmap-method000
draw_heatmap_legend-HeatmapList-method000
draw_heatmap_list-HeatmapList-method000
draw_title-Heatmap-method000
draw_title-HeatmapList-method000
draw_title-dispatch000
extract_comb000
getXY_in_parent_vp0.020.000.01
get_color_mapping_list-HeatmapAnnotation-method000
get_legend_param_list-HeatmapAnnotation-method000
grid.annotation_axis000
grid.boxplot0.010.000.02
grid.dendrogram0.660.030.69
grid.draw.Legends0.020.000.01
heatmap_legend_size-HeatmapList-method000
height.AnnotationFunction000
height.Heatmap000
height.HeatmapAnnotation000
height.HeatmapList000
height.Legends000
height.SingleAnnotation000
heightAssign.AnnotationFunction000
heightAssign.HeatmapAnnotation000
heightAssign.SingleAnnotation000
heightDetails.annotation_axis000
heightDetails.legend000
heightDetails.legend_body000
heightDetails.packed_legends000
ht_global_opt000
ht_opt000
is_abs_unit000
length.HeatmapAnnotation000
length.HeatmapList000
list_components000
list_to_matrix000
make_column_cluster-Heatmap-method000
make_comb_mat0.010.000.02
make_layout-Heatmap-method000
make_layout-HeatmapList-method000
make_layout-dispatch000
make_row_cluster-Heatmap-method000
map_to_colors-ColorMapping-method0.020.000.01
max_text_height000
max_text_width000
merge_dendrogram0.080.000.08
names.HeatmapAnnotation0.010.000.02
names.HeatmapList000
namesAssign.HeatmapAnnotation0.020.000.01
ncol.Heatmap000
nobs.AnnotationFunction000
nobs.HeatmapAnnotation000
nobs.SingleAnnotation000
normalize_comb_mat000
nrow.Heatmap000
oncoPrint000
order.comb_mat000
packLegend0.060.020.08
pct_v_pct000
pindex000
prepare-Heatmap-method000
print.comb_mat000
re_size-HeatmapAnnotation-method000
restore_matrix0.450.000.45
rowAnnotation000
row_anno_barplot000
row_anno_boxplot000
row_anno_density000
row_anno_histogram000
row_anno_link000
row_anno_points000
row_anno_text000
row_dend-Heatmap-method0.250.000.25
row_dend-HeatmapList-method0.680.000.69
row_dend-dispatch000
row_order-Heatmap-method0.270.000.26
row_order-HeatmapList-method0.690.000.69
row_order-dispatch000
set_component_height-Heatmap-method000
set_component_width-Heatmap-method000
set_name000
set_size000
show-AnnotationFunction-method000
show-ColorMapping-method000
show-Heatmap-method000
show-HeatmapAnnotation-method000
show-HeatmapList-method000
show-SingleAnnotation-method000
show-dispatch000
size.AnnotationFunction000
size.HeatmapAnnotation000
size.SingleAnnotation000
sizeAssign.AnnotationFunction0.020.000.01
sizeAssign.HeatmapAnnotation000
sizeAssign.SingleAnnotation000
smartAlign20.060.020.08
str.comb_mat000
subset_gp000
subset_matrix_by_row000
subset_vector000
summary.Heatmap000
summary.HeatmapList000
t.comb_mat000
test_alter_fun0.080.000.08
unify_mat_list000
upset_right_annotation000
upset_top_annotation000
width.AnnotationFunction0.010.000.02
width.Heatmap000
width.HeatmapAnnotation000
width.HeatmapList000
width.Legends0.020.000.01
width.SingleAnnotation000
widthAssign.AnnotationFunction000
widthAssign.HeatmapAnnotation000
widthAssign.SingleAnnotation000
widthDetails.annotation_axis000
widthDetails.legend000
widthDetails.legend_body000
widthDetails.packed_legends000