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INSTALL report for phantasus on tokay2

This page was generated on 2019-04-09 12:37:20 -0400 (Tue, 09 Apr 2019).

Package 1177/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phantasus 1.3.4
Alexey Sergushichev
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/phantasus
Branch: master
Last Commit: d5d3a2a
Last Changed Date: 2019-02-02 08:32:57 -0400 (Sat, 02 Feb 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK 

Summary

Package: phantasus
Version: 1.3.4
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/phantasus_1.3.4.tar.gz && rm -rf phantasus.buildbin-libdir && mkdir phantasus.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phantasus.buildbin-libdir phantasus_1.3.4.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL phantasus_1.3.4.zip && rm phantasus_1.3.4.tar.gz phantasus_1.3.4.zip
StartedAt: 2019-04-08 20:48:56 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:50:38 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 101.3 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/phantasus_1.3.4.tar.gz && rm -rf phantasus.buildbin-libdir && mkdir phantasus.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phantasus.buildbin-libdir phantasus_1.3.4.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL phantasus_1.3.4.zip && rm phantasus_1.3.4.tar.gz phantasus_1.3.4.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 9746k  100 9746k    0     0  50.2M      0 --:--:-- --:--:-- --:--:-- 52.0M

install for i386

* installing *source* package 'phantasus' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Loading config from C:/Users/biocbuild/bbs-3.9-bioc/R/library/opencpu/config/defaults.conf
Loading config from C:\Users\biocbuild\AppData\Local\opencpu\opencpu/user.conf
Warning: replacing previous import 'AnnotationDbi::head' by 'utils::head' when loading 'phantasus'
** help
*** installing help indices
  converting help for package 'phantasus'
    finding HTML links ... done
    adjustDataset                           html  
    annotationDBMeta                        html  
    calcPCA                                 html  
    calculatedAnnotation                    html  
    checkGPLs                               html  
    checkPreloadedNames                     html  
    collapseDataset                         html  
    convertByAnnotationDB                   html  
    createES                                html  
    es                                      html  
    getArchs4Files                          html  
    getES                                   html  
    getGDS                                  html  
    getGSE                                  html  
    gseaPlot                                html  
    limmaAnalysis                           html  
    loadFromARCHS4                          html  
    loadGEO                                 html  
    loadPreloaded                           html  
    performKmeans                           html  
    preloadedDirExists                      html  
    queryAnnotationDBMeta                   html  
    read.gct                                html  
    reparseCachedESs                        html  
    servePhantasus                          html  
    shinyGAMAnalysis                        html  
    subsetES                                html  
    write.gct                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Loading config from C:/Users/biocbuild/bbs-3.9-bioc/R/library/opencpu/config/defaults.conf
Loading config from C:\Users\biocbuild\AppData\Local\opencpu\opencpu/user.conf
Warning: replacing previous import 'AnnotationDbi::head' by 'utils::head' when loading 'phantasus'
** testing if installed package can be loaded from final location
Loading config from C:/Users/biocbuild/bbs-3.9-bioc/R/library/opencpu/config/defaults.conf
Loading config from C:\Users\biocbuild\AppData\Local\opencpu\opencpu/user.conf
Warning: replacing previous import 'AnnotationDbi::head' by 'utils::head' when loading 'phantasus'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'phantasus' ...
** testing if installed package can be loaded
Loading config from C:/Users/biocbuild/bbs-3.9-bioc/R/library/opencpu/config/defaults.conf
Loading config from C:\Users\biocbuild\AppData\Local\opencpu\opencpu/user.conf
Warning: replacing previous import 'AnnotationDbi::head' by 'utils::head' when loading 'phantasus'
* MD5 sums
packaged installation of 'phantasus' as phantasus_1.3.4.zip
* DONE (phantasus)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'phantasus' successfully unpacked and MD5 sums checked