Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

INSTALL report for manta on tokay2

This page was generated on 2019-04-09 12:00:10 -0400 (Tue, 09 Apr 2019).

Package 896/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
manta 1.29.1
Chris Berthiaume , Adrian Marchetti
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/manta
Branch: master
Last Commit: d1a8eae
Last Changed Date: 2019-01-04 13:37:21 -0400 (Fri, 04 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: manta
Version: 1.29.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/manta_1.29.1.tar.gz && rm -rf manta.buildbin-libdir && mkdir manta.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=manta.buildbin-libdir manta_1.29.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL manta_1.29.1.zip && rm manta_1.29.1.tar.gz manta_1.29.1.zip
StartedAt: 2019-04-08 18:58:44 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:59:46 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 62.1 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/manta_1.29.1.tar.gz && rm -rf manta.buildbin-libdir && mkdir manta.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=manta.buildbin-libdir manta_1.29.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL manta_1.29.1.zip && rm manta_1.29.1.tar.gz manta_1.29.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  674k  100  674k    0     0   9.7M      0 --:--:-- --:--:-- --:--:-- 10.9M

install for i386

* installing *source* package 'manta' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'manta'
    finding HTML links ... done
    cmdArgsToVariables                      html  
    collapseRepliCounts                     html  
    compbiasPlot                            html  
    compbiasTest                            html  
    generateWeights                         html  
    in2manta                                html  
    makeSampleDF                            html  
    manta-class                             html  
    manta                                   html  
    meta2counts                             html  
    metataxa2subcounts                      html  
    nf2nr                                   html  
    normfact2absTMM                         html  
    nr                                      html  
    outliers                                html  
    plot.manta                              html  
    pplacer2manta                           html  
    readSeastar                             html  
    seastar2counts                          html  
    summary.manta                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'manta' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'manta' as manta_1.29.1.zip
* DONE (manta)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'manta' successfully unpacked and MD5 sums checked