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INSTALL report for graper on tokay2

This page was generated on 2019-04-09 12:43:32 -0400 (Tue, 09 Apr 2019).

Package 700/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
graper 0.99.3
Britta Velten
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/graper
Branch: master
Last Commit: 15c55e7
Last Changed Date: 2019-01-29 11:43:47 -0400 (Tue, 29 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: graper
Version: 0.99.3
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/graper_0.99.3.tar.gz && rm -rf graper.buildbin-libdir && mkdir graper.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=graper.buildbin-libdir graper_0.99.3.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL graper_0.99.3.zip && rm graper_0.99.3.tar.gz graper_0.99.3.zip
StartedAt: 2019-04-08 19:02:17 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 19:06:47 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 269.8 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/graper_0.99.3.tar.gz && rm -rf graper.buildbin-libdir && mkdir graper.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=graper.buildbin-libdir graper_0.99.3.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL graper_0.99.3.zip && rm graper_0.99.3.tar.gz graper_0.99.3.zip
###
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100 27290  100 27290    0     0  97987      0 --:--:-- --:--:-- --:--:--   97k

install for i386

* installing *source* package 'graper' ...
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c fit_graper.cpp -o fit_graper.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o graper.dll tmp.def RcppExports.o fit_graper.o -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/graper.buildbin-libdir/00LOCK-graper/00new/graper/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'graper'
    finding HTML links ... done
    coef.graper                             html  
    getPIPs                                 html  
    graper                                  html  
    makeExampleData                         html  
    makeExampleDataWithUnequalGroups        html  
    plotELBO                                html  
    plotGroupPenalties                      html  
    plotPosterior                           html  
    predict.graper                          html  
    print.graper                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'graper' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c fit_graper.cpp -o fit_graper.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o graper.dll tmp.def RcppExports.o fit_graper.o -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/graper.buildbin-libdir/graper/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'graper' as graper_0.99.3.zip
* DONE (graper)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'graper' successfully unpacked and MD5 sums checked