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INSTALL report for dSimer on tokay2

This page was generated on 2019-04-09 12:26:39 -0400 (Tue, 09 Apr 2019).

Package 459/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
dSimer 1.9.0
Peng Ni
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/dSimer
Branch: master
Last Commit: 97fd519
Last Changed Date: 2018-10-30 11:54:36 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  ERROR  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: dSimer
Version: 1.9.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/dSimer_1.9.0.tar.gz && rm -rf dSimer.buildbin-libdir && mkdir dSimer.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=dSimer.buildbin-libdir dSimer_1.9.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL dSimer_1.9.0.zip && rm dSimer_1.9.0.tar.gz dSimer_1.9.0.zip
StartedAt: 2019-04-08 18:54:27 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:56:11 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 104.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/dSimer_1.9.0.tar.gz && rm -rf dSimer.buildbin-libdir && mkdir dSimer.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=dSimer.buildbin-libdir dSimer_1.9.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL dSimer_1.9.0.zip && rm dSimer_1.9.0.tar.gz dSimer_1.9.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 3192k  100 3192k    0     0  10.7M      0 --:--:-- --:--:-- --:--:-- 11.0M

install for i386

* installing *source* package 'dSimer' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c BOG.cpp -o BOG.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c GO2GeneAssos.cpp -o GO2GeneAssos.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c ICod.cpp -o ICod.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c PSB.cpp -o PSB.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c R_dSimer_init.c -o R_dSimer_init.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c Sun.cpp -o Sun.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o dSimer.dll tmp.def BOG.o GO2GeneAssos.o ICod.o PSB.o R_dSimer_init.o RcppExports.o Sun.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/dSimer.buildbin-libdir/00LOCK-dSimer/00new/dSimer/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'dSimer'
    finding HTML links ... done
    BOG                                     html  
    CosineDFV                               html  
    FunSim                                  html  
    HumanNet_sample                         html  
    HypergeometricTest                      html  
    ICod                                    html  
    InformationContent                      html  
    LLSn2List                               html  
    Normalize                               html  
    PPI_HPRD                                html  
    PSB                                     html  
    Separation                              html  
    Separation2Similarity                   html  
    Sun_annotation                          html  
    Sun_function                            html  
    Sun_topology                            html  
    d2g_fundo_entrezid                      html  
    d2g_fundo_symbol                        html  
    d2g_separation                          html  
    d2go_sample                             html  
    d2s_hsdn                                html  
    d2s_hsdn_sample                         html  
    dSimer-package                          html  
    get_GOterm2GeneAssos                    html  
    go2g_sample                             html  
    graphlet_sig_hprd                       html  
    interactome                             html  
    jaccardindex                            html  
    orbit_dependency_count                  html  
    plot_bipartite                          html  
    plot_heatmap                            html  
    plot_net                                html  
    plot_topo                               html  
    setWeight                               html  
    weight                                  html  
    x2y_conv2_y2x                           html  
    x2y_df2list                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'dSimer' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c BOG.cpp -o BOG.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c GO2GeneAssos.cpp -o GO2GeneAssos.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c ICod.cpp -o ICod.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c PSB.cpp -o PSB.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c R_dSimer_init.c -o R_dSimer_init.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c Sun.cpp -o Sun.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o dSimer.dll tmp.def BOG.o GO2GeneAssos.o ICod.o PSB.o R_dSimer_init.o RcppExports.o Sun.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/dSimer.buildbin-libdir/dSimer/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'dSimer' as dSimer_1.9.0.zip
* DONE (dSimer)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'dSimer' successfully unpacked and MD5 sums checked