Back to Multiple platform build/check report for BioC 3.9
ABCD[E]FGHIJKLMNOPQRSTUVWXYZ

INSTALL report for EGAD on tokay2

This page was generated on 2019-04-09 12:26:38 -0400 (Tue, 09 Apr 2019).

Package 481/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EGAD 1.11.0
Sara Ballouz
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/EGAD
Branch: master
Last Commit: 6c7dedb
Last Changed Date: 2018-10-30 11:54:36 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  ERROR  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  ERROR  ERROR  skipped  skipped 

Summary

Package: EGAD
Version: 1.11.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/EGAD_1.11.0.tar.gz && rm -rf EGAD.buildbin-libdir && mkdir EGAD.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EGAD.buildbin-libdir EGAD_1.11.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL EGAD_1.11.0.zip && rm EGAD_1.11.0.tar.gz EGAD_1.11.0.zip
StartedAt: 2019-04-08 20:50:06 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:51:18 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 72.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/EGAD_1.11.0.tar.gz && rm -rf EGAD.buildbin-libdir && mkdir EGAD.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EGAD.buildbin-libdir EGAD_1.11.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL EGAD_1.11.0.zip && rm EGAD_1.11.0.tar.gz EGAD_1.11.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  5 39.4M    5 2112k    0     0  23.1M      0  0:00:01 --:--:--  0:00:01 24.8M
100 39.4M  100 39.4M    0     0  62.5M      0 --:--:-- --:--:-- --:--:-- 63.0M

install for i386

* installing *source* package 'EGAD' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'EGAD'
    finding HTML links ... done
    GO.human                                html  
    GO.mouse                                html  
    GO.voc                                  html  
    assortativity                           html  
    atrr.human                              html  
    attr.mouse                              html  
    auc_multifunc                           html  
    auprc                                   html  
    auroc_analytic                          html  
    biogrid                                 html  
    build_binary_network                    html  
    build_coexp_GEOID                       html  
    build_coexp_expressionSet               html  
    build_coexp_network                     html  
    build_semantic_similarity_network       html  
    build_weighted_network                  html  
    calculate_multifunc                     html  
    conv_smoother                           html  
    example_annotations                     html  
    example_binary_network                  html  
    example_coexpression                    html  
    example_neighbor_voting                 html  
    extend_network                          html  
    filter_network                          html  
    filter_network_cols                     html  
    filter_network_rows                     html  
    filter_orthologs                        html  
    fmeasure                                html  
    genes                                   html  
    get_auc                                 html  
    get_biogrid                             html  
    get_counts                              html  
    get_density                             html  
    get_expression_data_gemma               html  
    get_expression_matrix_from_GEO          html  
    get_phenocarta                          html  
    get_prc                                 html  
    get_roc                                 html  
    make_annotations                        html  
    make_gene_network                       html  
    make_genelist                           html  
    make_transparent                        html  
    neighbor_voting                         html  
    node_degree                             html  
    ortho                                   html  
    pheno                                   html  
    plot_densities                          html  
    plot_density_compare                    html  
    plot_distribution                       html  
    plot_network_heatmap                    html  
    plot_prc                                html  
    plot_roc                                html  
    plot_roc_overlay                        html  
    plot_value_compare                      html  
    predictions                             html  
    repmat                                  html  
    run_GBA                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'EGAD' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EGAD' as EGAD_1.11.0.zip
* DONE (EGAD)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'EGAD' successfully unpacked and MD5 sums checked