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INSTALL report for CancerMutationAnalysis on tokay2

This page was generated on 2019-04-09 12:00:29 -0400 (Tue, 09 Apr 2019).

Package 205/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CancerMutationAnalysis 1.25.0
Simina M. Boca
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/CancerMutationAnalysis
Branch: master
Last Commit: 75ea9c0
Last Changed Date: 2018-10-30 11:54:30 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: CancerMutationAnalysis
Version: 1.25.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CancerMutationAnalysis_1.25.0.tar.gz && rm -rf CancerMutationAnalysis.buildbin-libdir && mkdir CancerMutationAnalysis.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CancerMutationAnalysis.buildbin-libdir CancerMutationAnalysis_1.25.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CancerMutationAnalysis_1.25.0.zip && rm CancerMutationAnalysis_1.25.0.tar.gz CancerMutationAnalysis_1.25.0.zip
StartedAt: 2019-04-08 18:52:36 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:53:52 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 76.0 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CancerMutationAnalysis_1.25.0.tar.gz && rm -rf CancerMutationAnalysis.buildbin-libdir && mkdir CancerMutationAnalysis.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CancerMutationAnalysis.buildbin-libdir CancerMutationAnalysis_1.25.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CancerMutationAnalysis_1.25.0.zip && rm CancerMutationAnalysis_1.25.0.tar.gz CancerMutationAnalysis_1.25.0.zip
###
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install for i386

* installing *source* package 'CancerMutationAnalysis' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c get.cdf.het.berns.c -o get.cdf.het.berns.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o CancerMutationAnalysis.dll tmp.def get.cdf.het.berns.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/CancerMutationAnalysis.buildbin-libdir/00LOCK-CancerMutationAnalysis/00new/CancerMutationAnalysis/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CancerMutationAnalysis'
    finding HTML links ... done
    BackRatesBreast                         html  
    BackRatesColon                          html  
    BackRatesGBM                            html  
    BackRatesMB                             html  
    BackRatesPancreas                       html  
    EntrezID2Name                           html  
    GeneAlterBreast                         html  
    GeneAlterColon                          html  
    GeneAlterGBM                            html  
    GeneAlterMB                             html  
    GeneAlterPancreas                       html  
    GeneCovBreast                           html  
    GeneCovColon                            html  
    GeneCovGBM                              html  
    GeneCovMB                               html  
    GeneCovPancreas                         html  
    GeneID2Name11                           html  
    GeneSampBreast                          html  
    GeneSampColon                           html  
    GeneSampGBM                             html  
    GeneSampMB                              html  
    GeneSampPancreas                        html  
    SetMethodsSims-class                    html  
    cma.fdr                                 html  
    cma.scores                              html  
    cma.set.sim                             html  
    cma.set.stat                            html  
    combine.sims                            html  
    extract.sims.method                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CancerMutationAnalysis' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c get.cdf.het.berns.c -o get.cdf.het.berns.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o CancerMutationAnalysis.dll tmp.def get.cdf.het.berns.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/CancerMutationAnalysis.buildbin-libdir/CancerMutationAnalysis/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CancerMutationAnalysis' as CancerMutationAnalysis_1.25.0.zip
* DONE (CancerMutationAnalysis)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'CancerMutationAnalysis' successfully unpacked and MD5 sums checked