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INSTALL report for BPRMeth on tokay2

This page was generated on 2019-04-09 12:28:06 -0400 (Tue, 09 Apr 2019).

Package 178/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BPRMeth 1.9.4
Chantriolnt-Andreas Kapourani
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/BPRMeth
Branch: master
Last Commit: abc23bd
Last Changed Date: 2019-02-16 06:30:29 -0400 (Sat, 16 Feb 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: BPRMeth
Version: 1.9.4
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BPRMeth_1.9.4.tar.gz && rm -rf BPRMeth.buildbin-libdir && mkdir BPRMeth.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BPRMeth.buildbin-libdir BPRMeth_1.9.4.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BPRMeth_1.9.4.zip && rm BPRMeth_1.9.4.tar.gz BPRMeth_1.9.4.zip
StartedAt: 2019-04-08 19:43:25 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 19:45:29 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 123.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BPRMeth_1.9.4.tar.gz && rm -rf BPRMeth.buildbin-libdir && mkdir BPRMeth.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BPRMeth.buildbin-libdir BPRMeth_1.9.4.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BPRMeth_1.9.4.zip && rm BPRMeth_1.9.4.tar.gz BPRMeth_1.9.4.zip
###
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100 1614k  100 1614k    0     0  20.7M      0 --:--:-- --:--:-- --:--:-- 23.1M

install for i386

* installing *source* package 'BPRMeth' ...
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mtune=generic -c model_likelihood.cpp -o model_likelihood.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BPRMeth.dll tmp.def RcppExports.o model_likelihood.o -fopenmp -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BPRMeth.buildbin-libdir/00LOCK-BPRMeth/00new/BPRMeth/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BPRMeth'
    finding HTML links ... done
    BPRMeth                                 html  
    bernoulli_data                          html  
    beta_data                               html  
    binomial_data                           html  
    boxplot_cluster_expr                    html  
    bpr_cluster_wrap                        html  
    bpr_optimize                            html  
    bpr_predict_wrap                        html  
    cluster_profiles_mle                    html  
    cluster_profiles_vb                     html  
    create_anno_region                      html  
    create_basis                            html  
    create_region_object                    html  
    design_matrix                           html  
    encode_expr                             html  
    encode_met                              html  
    eval_functions                          html  
    gaussian_data                           html  
    gex_data                                html  
    infer_profiles_gibbs                    html  
    infer_profiles_mle                      html  
    infer_profiles_vb                       html  
    inner_predict_model_expr                html  
    inner_train_model_expr                  html  
    meth_data                               html  
    model_log_likelihood                    html  
    old_boxplot_cluster_gex                 html  
    old_plot_cluster_prof                   html  
    old_plot_fitted_profiles                html  
    plot_cluster_profiles                   html  
    plot_infer_profiles                     html  
    finding level-2 HTML links ... done

    plot_predicted_expr                     html  
    pool_bs_seq_rep                         html  
    predict_expr                            html  
    preprocess_bs_seq                       html  
    preprocess_final_HTS_data               html  
    process_haib_caltech_wrap               html  
    read_anno                               html  
    read_bs_encode_haib                     html  
    read_chrom_size                         html  
    read_expr                               html  
    read_met                                html  
    read_rna_encode_caltech                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BPRMeth' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mtune=generic -c model_likelihood.cpp -o model_likelihood.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BPRMeth.dll tmp.def RcppExports.o model_likelihood.o -fopenmp -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BPRMeth.buildbin-libdir/BPRMeth/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BPRMeth' as BPRMeth_1.9.4.zip
* DONE (BPRMeth)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'BPRMeth' successfully unpacked and MD5 sums checked