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CHECK report for TabulaMurisData on malbec1

This page was generated on 2019-04-16 15:26:20 -0400 (Tue, 16 Apr 2019).

Package 328/360HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TabulaMurisData 1.0.0
Charlotte Soneson
Snapshot Date: 2019-04-16 11:00:05 -0400 (Tue, 16 Apr 2019)
URL: https://git.bioconductor.org/packages/TabulaMurisData
Branch: RELEASE_3_8
Last Commit: 2b24bfe
Last Changed Date: 2018-10-30 11:36:26 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  ERROR  OK [ ERROR ]

Summary

Package: TabulaMurisData
Version: 1.0.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:TabulaMurisData.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings TabulaMurisData_1.0.0.tar.gz
StartedAt: 2019-04-16 14:07:44 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 14:07:46 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 1.5 seconds
RetCode: 1
Status:  ERROR 
CheckDir: TabulaMurisData.Rcheck
Warnings: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:TabulaMurisData.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings TabulaMurisData_1.0.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-data-experiment/meat/TabulaMurisData.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TabulaMurisData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TabulaMurisData’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TabulaMurisData’ can be installed ... ERROR
Installation failed.
See ‘/home/biocbuild/bbs-3.8-data-experiment/meat/TabulaMurisData.Rcheck/00install.out’ for details.
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.8-data-experiment/meat/TabulaMurisData.Rcheck/00check.log’
for details.


Installation output

TabulaMurisData.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL TabulaMurisData
###
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘TabulaMurisData’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
updating metadata: snapshotDate(): 2018-10-30
Error: package or namespace load failed for ‘TabulaMurisData’:
 .onLoad failed in loadNamespace() for 'TabulaMurisData', details:
  call: readRDS(.db_index_file(x))
  error: unknown input format
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/biocbuild/bbs-3.8-bioc/R/library/TabulaMurisData’
* restoring previous ‘/home/biocbuild/bbs-3.8-bioc/R/library/TabulaMurisData’

Tests output


Example timings