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CHECK report for MSBdata on malbec1

This page was generated on 2019-04-16 15:26:10 -0400 (Tue, 16 Apr 2019).

Package 221/360HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MSBdata 1.0.0
Wolfgang Huber
Snapshot Date: 2019-04-16 11:00:05 -0400 (Tue, 16 Apr 2019)
URL: https://git.bioconductor.org/packages/MSBdata
Branch: RELEASE_3_8
Last Commit: 3a4a328
Last Changed Date: 2018-10-30 11:36:23 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: MSBdata
Version: 1.0.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:MSBdata.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings MSBdata_1.0.0.tar.gz
StartedAt: 2019-04-16 13:55:10 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 13:55:17 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 7.3 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: MSBdata.Rcheck
Warnings: 4

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:MSBdata.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings MSBdata_1.0.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-data-experiment/meat/MSBdata.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MSBdata/DESCRIPTION’ ... OK
* this is package ‘MSBdata’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MSBdata’ can be installed ... WARNING
Found the following significant warnings:
  Warning: Package 'MSBdata' is deprecated and will be removed from Bioconductor
See ‘/home/biocbuild/bbs-3.8-data-experiment/meat/MSBdata.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
  installed size is  7.4Mb
  sub-directories of 1Mb or more:
    extdata   3.5Mb
    images    3.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  ‘brcalymphnode’ ‘e100’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: package needs dependence on R (>= 2.10)
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘MSBdata.Rnw’
Files named as vignettes but with no recognized vignette engine:
   ‘vignettes/MSBdata.Rnw’
(Is a VignetteBuilder field missing?)
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 4 WARNINGs, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.8-data-experiment/meat/MSBdata.Rcheck/00check.log’
for details.



Installation output

MSBdata.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL MSBdata
###
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘MSBdata’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘MSBdata’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: Package 'MSBdata' is deprecated and will be removed from Bioconductor
  version 3.8. The package has been renamed MSMB.
* DONE (MSBdata)

Tests output


Example timings