Back to Multiple platform build/check report for BioC 3.8 experimental data

CHECK report for DvDdata on malbec1

This page was generated on 2019-04-16 15:26:07 -0400 (Tue, 16 Apr 2019).

Package 94/360HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DvDdata 1.18.0
J. Saez-Rodriguez
Snapshot Date: 2019-04-16 11:00:05 -0400 (Tue, 16 Apr 2019)
URL: https://git.bioconductor.org/packages/DvDdata
Branch: RELEASE_3_8
Last Commit: dcdbcaa
Last Changed Date: 2018-10-30 11:36:22 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: DvDdata
Version: 1.18.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:DvDdata.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings DvDdata_1.18.0.tar.gz
StartedAt: 2019-04-16 13:38:50 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 13:39:00 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 9.2 seconds
RetCode: 0
Status:  OK 
CheckDir: DvDdata.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:DvDdata.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings DvDdata_1.18.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-data-experiment/meat/DvDdata.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DvDdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DvDdata’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DvDdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 44.0Mb
  sub-directories of 1Mb or more:
    data  43.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: DvDdata-package.Rd:35-37: Dropping empty section \seealso
prepare_Rd: GEOfactorvalues.Rd:18-20: Dropping empty section \references
prepare_Rd: annotationlist.Rd:17-18: Dropping empty section \source
prepare_Rd: druglabels.Rd:11-13: Dropping empty section \details
prepare_Rd: genelist.Rd:14-16: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.8-data-experiment/meat/DvDdata.Rcheck/00check.log’
for details.



Installation output

DvDdata.Rcheck/00install.out

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL DvDdata
###
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘DvDdata’ ...
** data
*** moving datasets to lazyload DB
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DvDdata)

Tests output


Example timings

DvDdata.Rcheck/DvDdata-Ex.timings

nameusersystemelapsed
DvDdata-package0.0080.0040.010
GEOfactorvalues0.0000.0000.001
annotationlist0.0040.0000.001
cytodisease0.0000.0000.001
cytodrug0.0000.0000.001
diseaseClusters0.0040.0000.001
diseaseRL0.0000.0000.001
diseaselabels0.0000.0000.001
drugClusters0.0000.0000.001
drugRL0.0000.0040.001
druglabels000
genelist000