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INSTALL report for trio on tokay1

This page was generated on 2019-04-13 11:23:06 -0400 (Sat, 13 Apr 2019).

Package 1588/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
trio 3.20.0
Holger Schwender
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/trio
Branch: RELEASE_3_8
Last Commit: 16aad35
Last Changed Date: 2018-10-30 11:41:51 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: trio
Version: 3.20.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/trio_3.20.0.tar.gz && rm -rf trio.buildbin-libdir && mkdir trio.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trio.buildbin-libdir trio_3.20.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL trio_3.20.0.zip && rm trio_3.20.0.tar.gz trio_3.20.0.zip
StartedAt: 2019-04-12 18:22:33 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 18:23:50 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 77.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/trio_3.20.0.tar.gz && rm -rf trio.buildbin-libdir && mkdir trio.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trio.buildbin-libdir trio_3.20.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL trio_3.20.0.zip && rm trio_3.20.0.tar.gz trio_3.20.0.zip
###
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install for i386

* installing *source* package 'trio' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'trio'
    finding HTML links ... done
    allelicTDT                              html  
    colEMlrt                                html  
    colGxE                                  html  
    colGxGPerms                             html  
    colPOlrt                                html  
    colTDTmaxTest                           html  
    colTDTsam                               html  
    findLDblocks                            html  
    getLD                                   html  
    getMatPseudo                            html  
    lrControl                               html  
    ped2geno                                html  
    plot.LDblocks                           html  
    plot.getLD                              html  
    plot.trioLR                             html  
    poly4root                               html  
    print.colGxE                            html  
    print.trioFS                            html  
    print.trioLR                            html  
    probTDT                                 html  
    read.pedfile                            html  
    removeSNPs                              html  
    scoreTDT                                html  
    tdt                                     html  
    tdtGxG                                  html  
    trio.check                              html  
    trio.data                               html  
    trio.permTest                           html  
    trio.power                              html  
    trio.prepare                            html  
    trio.sim                                html  
    trioFS                                  html  
    trioLR                                  html  
    vcf2geno                                html  
** building package indices
** installing vignettes
   'trio.Rnw' 
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'trio' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'trio' as trio_3.20.0.zip
* DONE (trio)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'trio' successfully unpacked and MD5 sums checked
In R CMD INSTALL