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INSTALL report for treeio on tokay1

This page was generated on 2019-04-13 11:27:25 -0400 (Sat, 13 Apr 2019).

Package 1583/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
treeio 1.6.2
Guangchuang Yu
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/treeio
Branch: RELEASE_3_8
Last Commit: 4fb11e8
Last Changed Date: 2019-01-25 15:18:28 -0400 (Fri, 25 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: treeio
Version: 1.6.2
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/treeio_1.6.2.tar.gz && rm -rf treeio.buildbin-libdir && mkdir treeio.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=treeio.buildbin-libdir treeio_1.6.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL treeio_1.6.2.zip && rm treeio_1.6.2.tar.gz treeio_1.6.2.zip
StartedAt: 2019-04-12 18:55:47 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 18:57:10 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 83.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/treeio_1.6.2.tar.gz && rm -rf treeio.buildbin-libdir && mkdir treeio.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=treeio.buildbin-libdir treeio_1.6.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL treeio_1.6.2.zip && rm treeio_1.6.2.tar.gz treeio_1.6.2.zip
###
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100  744k  100  744k    0     0  16.7M      0 --:--:-- --:--:-- --:--:-- 18.1M

install for i386

* installing *source* package 'treeio' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'treeio'
    finding HTML links ... done
    Nnode.treedata                          html  
    as.treedata                             html  
    beast-mrbayes-parser                    html  
    drop.tip-methods                        html  
    get-placements                          html  
    get.tree                                html  
    get.treetext-methods                    html  
    getNodeNum                              html  
    is.ggtree                               html  
    jplace-class                            html  
    label_branch_paml                       html  
    mask                                    html  
    merge_tree                              html  
    phyPML                                  html  
    print.beastList                         html  
    raxml2nwk                               html  
    read-jtree                              html  
    read.astral                             html  
    read.codeml                             html  
    read.codeml_mlc                         html  
    read.fasta                              html  
    read.hyphy                              html  
    read.hyphy.seq                          html  
    read.iqtree                             html  
    read.jplace                             html  
    read.newick                             html  
    read.nhx                                html  
    read.paml_rst                           html  
    read.phylip                             html  
    read.phylip.seq                         html  
    read.phylip.tree                        html  
    read.phyloT                             html  
    read.r8s                                html  
    read.raxml                              html  
    reexports                               html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpa4CnPc/R.INSTALLe6898e11c8/treeio/man/reexports.Rd:34: file link 'Nnode' in package 'ape' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpa4CnPc/R.INSTALLe6898e11c8/treeio/man/reexports.Rd:34: file link 'Ntip' in package 'ape' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpa4CnPc/R.INSTALLe6898e11c8/treeio/man/reexports.Rd:34: file link 'is.rooted' in package 'ape' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpa4CnPc/R.INSTALLe6898e11c8/treeio/man/reexports.Rd:36: file link 'full_join' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpa4CnPc/R.INSTALLe6898e11c8/treeio/man/reexports.Rd:38: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpa4CnPc/R.INSTALLe6898e11c8/treeio/man/reexports.Rd:40: file link 'data_frame' in package 'tibble' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpa4CnPc/R.INSTALLe6898e11c8/treeio/man/reexports.Rd:42: file link 'get.fields' in package 'tidytree' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpa4CnPc/R.INSTALLe6898e11c8/treeio/man/reexports.Rd:42: file link 'get.data' in package 'tidytree' does not exist and so has been treated as a topic
    rename_taxa                             html  
    taxa_rename                             html  
    tree_subset                             html  
    write-jtree                             html  
    write.beast                             html  
    write.jplace                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'treeio' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'treeio' as treeio_1.6.2.zip
* DONE (treeio)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'treeio' successfully unpacked and MD5 sums checked
In R CMD INSTALL