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INSTALL report for seqplots on tokay1

This page was generated on 2019-04-13 11:24:19 -0400 (Sat, 13 Apr 2019).

Package 1424/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
seqplots 1.20.1
Przemyslaw Stempor
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/seqplots
Branch: RELEASE_3_8
Last Commit: 85f7caa
Last Changed Date: 2019-01-04 13:50:08 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: seqplots
Version: 1.20.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/seqplots_1.20.1.tar.gz && rm -rf seqplots.buildbin-libdir && mkdir seqplots.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqplots.buildbin-libdir seqplots_1.20.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL seqplots_1.20.1.zip && rm seqplots_1.20.1.tar.gz seqplots_1.20.1.zip
StartedAt: 2019-04-12 19:57:40 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:01:27 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 227.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/seqplots_1.20.1.tar.gz && rm -rf seqplots.buildbin-libdir && mkdir seqplots.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqplots.buildbin-libdir seqplots_1.20.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL seqplots_1.20.1.zip && rm seqplots_1.20.1.tar.gz seqplots_1.20.1.zip
###
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install for i386

* installing *source* package 'seqplots' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'seqplots'
    finding HTML links ... done
    MotifSetup-class                        html  
    PlotSetArray-class                      html  
    PlotSetList-class                       html  
    PlotSetPair-class                       html  
    add_local_file                          html  
    deployServerInstance                    html  
    getPlotSetArray                         html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpe0xJOv/R.INSTALL20c041a768d/seqplots/man/getPlotSetArray.Rd:144: file link 'installed.genomes' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpe0xJOv/R.INSTALL20c041a768d/seqplots/man/getPlotSetArray.Rd:147: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
    getREF                                  html  
    ggHeatmapPlotWrapper                    html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpe0xJOv/R.INSTALL20c041a768d/seqplots/man/ggHeatmapPlotWrapper.Rd:75: file link 'grDevices' in package 'grDevices' does not exist and so has been treated as a topic
    heatmapPlotWrapper                      html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpe0xJOv/R.INSTALL20c041a768d/seqplots/man/heatmapPlotWrapper.Rd:76: file link 'grDevices' in package 'grDevices' does not exist and so has been treated as a topic
    imPlot2                                 html  
    import.narrowPeak                       html  
    num2bp                                  html  
    num2sci                                 html  
    plot                                    html  
    plotAverage                             html  
    plotHeatmap                             html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpe0xJOv/R.INSTALL20c041a768d/seqplots/man/plotHeatmap.Rd:177: file link 'grDevices' in package 'grDevices' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpe0xJOv/R.INSTALL20c041a768d/seqplots/man/plotHeatmap.Rd:192: file link 'geom_raster' in package 'ggplot2' does not exist and so has been treated as a topic
    plotMext                                html  
    run                                     html  
    seqplots-generic                        html  
    seqplots                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'seqplots' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqplots' as seqplots_1.20.1.zip
* DONE (seqplots)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'seqplots' successfully unpacked and MD5 sums checked
In R CMD INSTALL