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BUILD BIN report for scmap on merida1

This page was generated on 2019-04-16 12:00:46 -0400 (Tue, 16 Apr 2019).

Package 1398/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scmap 1.4.1
Vladimir Kiselev
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/scmap
Branch: RELEASE_3_8
Last Commit: 1e83b1a
Last Changed Date: 2019-01-04 13:48:51 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: scmap
Version: 1.4.1
Command: rm -rf scmap.buildbin-libdir && mkdir scmap.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh scmap_1.4.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R scmap.buildbin-libdir
StartedAt: 2019-04-16 04:43:02 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 04:43:39 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 37.5 seconds
RetCode: 0
Status:  OK 
PackageFile: scmap_1.4.1.tgz
PackageFileSize: 3.483 MiB

Command output

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### Running command:
###
###   rm -rf scmap.buildbin-libdir && mkdir scmap.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh scmap_1.4.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R scmap.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=scmap.buildbin-libdir scmap_1.4.1.tar.gz'
>>>>>>> 

* installing *source* package ‘scmap’ ...
** libs
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c scmap.cpp -o scmap.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scmap.so RcppExports.o scmap.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/scmap.buildbin-libdir/scmap/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’
* DONE (scmap)


>>>>>>> 
>>>>>>> FIXING LINKS FOR scmap.buildbin-libdir/scmap/libs//scmap.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "scmap.buildbin-libdir/scmap/libs//scmap.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "scmap.buildbin-libdir/scmap/libs//scmap.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "scmap.buildbin-libdir/scmap/libs//scmap.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "scmap.buildbin-libdir/scmap/libs//scmap.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "scmap.buildbin-libdir/scmap/libs//scmap.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "scmap.buildbin-libdir/scmap/libs//scmap.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "scmap.buildbin-libdir/scmap/libs//scmap.so"