Back to Multiple platform build/check report for BioC 3.8
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

INSTALL report for plyranges on tokay1

This page was generated on 2019-04-13 11:29:07 -0400 (Sat, 13 Apr 2019).

Package 1172/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
plyranges 1.2.0
Stuart Lee
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/plyranges
Branch: RELEASE_3_8
Last Commit: 0e8d924
Last Changed Date: 2018-10-30 11:42:08 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: plyranges
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/plyranges_1.2.0.tar.gz && rm -rf plyranges.buildbin-libdir && mkdir plyranges.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plyranges.buildbin-libdir plyranges_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL plyranges_1.2.0.zip && rm plyranges_1.2.0.tar.gz plyranges_1.2.0.zip
StartedAt: 2019-04-12 19:53:00 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:54:50 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 109.7 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/plyranges_1.2.0.tar.gz && rm -rf plyranges.buildbin-libdir && mkdir plyranges.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plyranges.buildbin-libdir plyranges_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL plyranges_1.2.0.zip && rm plyranges_1.2.0.tar.gz plyranges_1.2.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  996k  100  996k    0     0  19.5M      0 --:--:-- --:--:-- --:--:-- 21.1M

install for i386

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  restoring symbolic link as a file copy
* installing *source* package 'plyranges' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'plyranges'
    finding HTML links ... done
    as_ranges                               html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/as_ranges.Rd:32: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/as_ranges.Rd:32: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
    compute_coverage                        html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/compute_coverage.Rd:37: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/compute_coverage.Rd:37: file link 'coverage' in package 'GenomicRanges' does not exist and so has been treated as a topic
    element-setops                          html  
    filter-ranges                           html  
    flank-ranges                            html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/flank-ranges.Rd:59: file link 'flank' in package 'GenomicRanges' does not exist and so has been treated as a topic
    group_by-ranges                         html  
    io-bam-read                             html  
    io-bed-read                             html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/io-bed-read.Rd:75: file link 'BEDFile' in package 'rtracklayer' does not exist and so has been treated as a topic
    io-bed-write                            html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/io-bed-write.Rd:57: file link 'BEDFile' in package 'rtracklayer' does not exist and so has been treated as a topic
    io-bigwig-read                          html  
    io-bigwig-write                         html  
    io-gff-read                             html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/io-gff-read.Rd:57: file link 'GFFFile' in package 'rtracklayer' does not exist and so has been treated as a topic
    io-gff-write                            html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/io-gff-write.Rd:44: file link 'GFFFile' in package 'rtracklayer' does not exist and so has been treated as a topic
    io-wig-read                             html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/io-wig-read.Rd:36: file link 'WIGFile' in package 'rtracklayer' does not exist and so has been treated as a topic
    io-wig-write                            html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/io-wig-write.Rd:23: file link 'WIGFile' in package 'rtracklayer' does not exist and so has been treated as a topic
    mutate-ranges                           html  
    n                                       html  
    n_distinct                              html  
    overlap-joins                           html  
    overscope_ranges                        html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/overscope_ranges.Rd:24: file link 'new_data_mask' in package 'rlang' does not exist and so has been treated as a topic
    plyranges-package                       html  
    ranges-anchor                           html  
    ranges-arrange                          html  
    ranges-bind                             html  
    ranges-chop                             html  
    ranges-class                            html  
    ranges-construct                        html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/ranges-construct.Rd:50: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    ranges-count-overlaps                   html  
    ranges-deferred                         html  
    ranges-disjoin                          html  
    ranges-filter-overlaps                  html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/ranges-filter-overlaps.Rd:60: file link 'subsetByOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
    ranges-follow                           html  
    ranges-info                             html  
    ranges-interweave                       html  
    ranges-nearest                          html  
    ranges-overlaps-self                    html  
    ranges-overlaps                         html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/ranges-overlaps.Rd:122: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/ranges-overlaps.Rd:122: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
    ranges-pairs                            html  
    ranges-precede                          html  
    ranges-reduce                           html  
    ranges-select                           html  
    ranges-setops                           html  
    ranges-setters                          html  
    ranges-summarise                        html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/ranges-summarise.Rd:15: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
    ranges-tile                             html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/ranges-tile.Rd:52: file link 'tile' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/ranges-tile.Rd:52: file link 'tile' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/ranges-tile.Rd:54: file link 'slidingWindows' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/ranges-tile.Rd:54: file link 'slidingWindows' in package 'GenomicRanges' does not exist and so has been treated as a topic
    ranges-unnest                           html  
    shift-ranges                            html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/shift-ranges.Rd:49: file link 'shift' in package 'IRanges' does not exist and so has been treated as a topic
    stretch                                 html  
    tidyverse-reexports                     html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/tidyverse-reexports.Rd:29: file link 'ungroup' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/tidyverse-reexports.Rd:29: file link 'group_vars' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/tidyverse-reexports.Rd:29: file link 'summarize' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/tidyverse-reexports.Rd:31: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/tidyverse-reexports.Rd:33: file link '!!!' in package 'rlang' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpGc0Ha1/R.INSTALL2004594098/plyranges/man/tidyverse-reexports.Rd:33: file link '!!' in package 'rlang' does not exist and so has been treated as a topic
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  restoring symbolic link as a file copy
* installing *source* package 'plyranges' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'plyranges' as plyranges_1.2.0.zip
* DONE (plyranges)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'plyranges' successfully unpacked and MD5 sums checked
In R CMD INSTALL