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INSTALL report for pbcmc on tokay1

This page was generated on 2019-04-13 11:26:39 -0400 (Sat, 13 Apr 2019).

Package 1131/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pbcmc 1.10.1
Cristobal Fresno
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/pbcmc
Branch: RELEASE_3_8
Last Commit: bb53ec7
Last Changed Date: 2018-11-30 11:38:31 -0400 (Fri, 30 Nov 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  ERROR 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  ERROR  OK 

Summary

Package: pbcmc
Version: 1.10.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/pbcmc_1.10.1.tar.gz && rm -rf pbcmc.buildbin-libdir && mkdir pbcmc.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pbcmc.buildbin-libdir pbcmc_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL pbcmc_1.10.1.zip && rm pbcmc_1.10.1.tar.gz pbcmc_1.10.1.zip
StartedAt: 2019-04-12 19:30:44 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:31:25 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 40.9 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/pbcmc_1.10.1.tar.gz && rm -rf pbcmc.buildbin-libdir && mkdir pbcmc.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pbcmc.buildbin-libdir pbcmc_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL pbcmc_1.10.1.zip && rm pbcmc_1.10.1.tar.gz pbcmc_1.10.1.zip
###
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install for i386

* installing *source* package 'pbcmc' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'BiocGenerics' for request: 'unlist' when loading 'pbcmc'
** help
*** installing help indices
  converting help for package 'pbcmc'
    finding HTML links ... done
    MolecularPermutationClassifier-class    html  
    MolecularPermutationClassifierConstructor
                                            html  
    MolecularPermutationClassifierGenerics
                                            html  
    MolecularPermutationClassifierGetseters
                                            html  
    MolecularPermutationClassifierShow      html  
    PAM50-class                             html  
    PAM50Classify                           html  
    PAM50Constructor                        html  
    finding level-2 HTML links ... done

    PAM50Filtrate                           html  
    PAM50Permutate                          html  
    PAM50SubjectReport                      html  
    PAM50Subtype                            html  
    pbcmcData                               html  
    pbcmcPackage                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in package 'BiocGenerics' for request: 'unlist' when loading 'pbcmc'
Warning: Package 'pbcmc' is deprecated and will be removed from Bioconductor
  version 3.9
In R CMD INSTALL

install for x64

* installing *source* package 'pbcmc' ...
** testing if installed package can be loaded
No methods found in package 'BiocGenerics' for request: 'unlist' when loading 'pbcmc'
Warning: Package 'pbcmc' is deprecated and will be removed from Bioconductor
  version 3.9
* MD5 sums
packaged installation of 'pbcmc' as pbcmc_1.10.1.zip
* DONE (pbcmc)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'pbcmc' successfully unpacked and MD5 sums checked
In R CMD INSTALL