Package: oneSENSE

Version: 1.4.1

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:oneSENSE.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings oneSENSE_1.4.1.tar.gz

StartedAt: 2019-04-16 01:52:52 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 01:56:16 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 203.8 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: oneSENSE.Rcheck

Warnings: 1

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:oneSENSE.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings oneSENSE_1.4.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/oneSENSE.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘oneSENSE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘oneSENSE’ version ‘1.4.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘oneSENSE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... WARNING
Found the following significant warnings:

  Warning: 'export' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Examples with CPU or elapsed time > 5s
                 user system elapsed
OneSmapperFreq2 6.704  0.660   9.456
OneSmapperFlour 5.532  0.492 134.209
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.8-bioc/meat/oneSENSE.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL oneSENSE
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘oneSENSE’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (oneSENSE)

name	user	system	elapsed
FCStSNE	0	0	0
OneSmapperFlour	5.532	0.492	134.209
OneSmapperFreq1	0.296	0.092	1.114
OneSmapperFreq2	6.704	0.660	9.456
getCoords	0.108	0.120	0.227
getParameters	0.020	0.000	0.021
oneSENSE_GUI	0	0	0