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INSTALL report for mzID on tokay1

This page was generated on 2019-04-13 11:23:10 -0400 (Sat, 13 Apr 2019).

Package 1034/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mzID 1.20.1
Thomas Lin Pedersen
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/mzID
Branch: RELEASE_3_8
Last Commit: 8195826
Last Changed Date: 2019-01-04 13:41:34 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: mzID
Version: 1.20.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/mzID_1.20.1.tar.gz && rm -rf mzID.buildbin-libdir && mkdir mzID.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mzID.buildbin-libdir mzID_1.20.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL mzID_1.20.1.zip && rm mzID_1.20.1.tar.gz mzID_1.20.1.zip
StartedAt: 2019-04-12 18:27:17 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 18:28:08 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 51.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/mzID_1.20.1.tar.gz && rm -rf mzID.buildbin-libdir && mkdir mzID.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mzID.buildbin-libdir mzID_1.20.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL mzID_1.20.1.zip && rm mzID_1.20.1.tar.gz mzID_1.20.1.zip
###
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install for i386

* installing *source* package 'mzID' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mzID'
    finding HTML links ... done
    flatten                                 html  
    increment                               html  
    keyFor                                  html  
    mzID-class                              html  
    mzID-getters                            html  
    mzID-package                            html  
    mzID                                    html  
    mzIDCollection-class                    html  
    mzIDCollection                          html  
    mzIDdatabase-class                      html  
    mzIDdatabase                            html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMfqugD/R.INSTALL6bc5a2f394/mzID/man/mzIDdatabase.Rd:11: file link 'xmlInternalTreeParse' in package 'XML' does not exist and so has been treated as a topic
    mzIDevidence-class                      html  
    mzIDevidence                            html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMfqugD/R.INSTALL6bc5a2f394/mzID/man/mzIDevidence.Rd:11: file link 'xmlInternalTreeParse' in package 'XML' does not exist and so has been treated as a topic
    mzIDparameters-class                    html  
    mzIDparameters                          html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMfqugD/R.INSTALL6bc5a2f394/mzID/man/mzIDparameters.Rd:11: file link 'xmlInternalTreeParse' in package 'XML' does not exist and so has been treated as a topic
    mzIDpeptides-class                      html  
    mzIDpeptides                            html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMfqugD/R.INSTALL6bc5a2f394/mzID/man/mzIDpeptides.Rd:11: file link 'xmlInternalTreeParse' in package 'XML' does not exist and so has been treated as a topic
    mzIDpsm-class                           html  
    mzIDpsm                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMfqugD/R.INSTALL6bc5a2f394/mzID/man/mzIDpsm.Rd:11: file link 'xmlInternalTreeParse' in package 'XML' does not exist and so has been treated as a topic
    removeDecoy                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'mzID' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mzID' as mzID_1.20.1.zip
* DONE (mzID)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'mzID' successfully unpacked and MD5 sums checked
In R CMD INSTALL