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BUILD report for msa on tokay1

This page was generated on 2019-04-13 11:25:20 -0400 (Sat, 13 Apr 2019).

Package 1004/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
msa 1.14.0
Ulrich Bodenhofer
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/msa
Branch: RELEASE_3_8
Last Commit: b311929
Last Changed Date: 2018-10-30 11:41:58 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK [ OK ] OK  ERROR 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: msa
Version: 1.14.0
Command: chmod a+r msa -R && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data msa
StartedAt: 2019-04-12 22:29:24 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 22:37:39 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 495.1 seconds
RetCode: 0
Status:  OK  
PackageFile: msa_1.14.0.tar.gz
PackageFileSize: 3.603 MiB

Command output

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### Running command:
###
###   chmod a+r msa -R && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data msa
###
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* checking for file 'msa/DESCRIPTION' ... OK
* preparing 'msa':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running 'cleanup.win'
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
* running 'cleanup.win'
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building 'msa_1.14.0.tar.gz'
Warning: file 'msa/cleanup' did not have execute permissions: corrected
Warning: file 'msa/src/ClustalOmega/configure' did not have execute permissions: corrected
Warning: file 'msa/src/ClustalW/configure' did not have execute permissions: corrected
Warning: file 'msa/src/gc-7.2/configure' did not have execute permissions: corrected
Warning: file 'msa/src/gc-7.2/libatomic_ops/configure' did not have execute permissions: corrected