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INSTALL report for mixOmics on tokay1

This page was generated on 2019-04-13 11:29:53 -0400 (Sat, 13 Apr 2019).

Package 980/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mixOmics 6.6.2
Kim-Anh Le Cao
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/mixOmics
Branch: RELEASE_3_8
Last Commit: 240e862
Last Changed Date: 2019-02-28 18:45:38 -0400 (Thu, 28 Feb 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: mixOmics
Version: 6.6.2
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/mixOmics_6.6.2.tar.gz && rm -rf mixOmics.buildbin-libdir && mkdir mixOmics.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mixOmics.buildbin-libdir mixOmics_6.6.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL mixOmics_6.6.2.zip && rm mixOmics_6.6.2.tar.gz mixOmics_6.6.2.zip
StartedAt: 2019-04-12 18:49:50 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 18:52:08 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 137.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/mixOmics_6.6.2.tar.gz && rm -rf mixOmics.buildbin-libdir && mkdir mixOmics.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mixOmics.buildbin-libdir mixOmics_6.6.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL mixOmics_6.6.2.zip && rm mixOmics_6.6.2.tar.gz mixOmics_6.6.2.zip
###
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install for i386

* installing *source* package 'mixOmics' ...
files 'R/MCVfold.R', 'R/multilevel.R', 'R/plotContrib.R', 'R/scatterutil.R', 'R/tune.multilevel.R', 'man/multilevel.Rd', 'man/plotContrib.Rd', 'man/scatterutil.Rd', 'man/tune.multilevel.Rd' are missing
files 'DESCRIPTION', 'NAMESPACE', 'NEWS', 'R/LOGOCV.R', 'R/bin.color.R', 'R/block.pls.R', 'R/block.plsda.R', 'R/block.spls.R', 'R/block.splsda.R', 'R/check_entry.R', 'R/cim.R', 'R/cimDiablo.R', 'R/circosPlot.R', 'R/color.GreenRed.R', 'R/color.jet.R', 'R/color.mixo.R', 'R/color.spectral.R', 'R/explained_variance.R', 'R/ica.def.par.R', 'R/image.tune.rcc.R', 'R/imageMap.R', 'R/imgCor.R', 'R/internal_graphicModule.R', 'R/internal_mint.block.R', 'R/internal_mint.block_helpers.R', 'R/internal_predict.DA.R', 'R/internal_wrapper.mint.R', 'R/internal_wrapper.mint.block.R', 'R/mat.rank.R', 'R/mint.block.pls.R', 'R/mint.block.plsda.R', 'R/mint.block.spls.R', 'R/mint.block.splsda.R', 'R/mint.pls.R', 'R/mint.plsda.R', 'R/mint.spls.R', 'R/mint.splsda.R', 'R/mixOmics.R', 'R/network.R', 'R/nipals.R', 'R/pca.R', 'R/pcasvd.R', 'R/perf.R', 'R/perf.diablo.R', 'R/perf.mint.splsda.R', 'R/plot.pca.R', 'R/plot.perf.R', 'R/plotArrow.R', 'R/plotDiablo.R', 'R/plotIndiv.R', 'R/plotIndiv.mint.R', 'R/plotIndiv.pca.R', 'R/plotIndiv.pls.R', 'R/plotIndiv.sgcca.R', 'R/plotLoadings.R', 'R/plotLoadings.mint.spls.R', 'R/plotLoadings.mint.splsda.R', 'R/plotLoadings.spls.R', 'R/plotLoadings.splsda.R', 'R/plotVar.R', 'R/pls.R', 'R/plsda.R', 'R/predict.mint.block.pls.R', 'R/print.methods.R', 'R/selectVar.R', 'R/sipca.R', 'R/spca.R', 'R/spls.R', 'R/splsda.R', 'R/summary.R', 'R/tune.R', 'R/tune.mint.splsda.R', 'R/tune.rcc.R', 'R/tune.splsda.R', 'R/tune.splslevel.R', 'R/vip.R', 'R/wrapper.ilr.R', 'R/wrapper.rgcca.R', 'R/wrapper.sgcca.R', 'R/zzz.R', 'data/Koren.16S.rda', 'data/datalist', 'data/diverse.16S.rda', 'data/vac18.simulated.rda', 'man/Koren.16S.Rd', 'man/block.pls.Rd', 'man/block.plsda.Rd', 'man/block.spls.Rd', 'man/block.splsda.Rd', 'man/breast.TCGA.Rd', 'man/breast.tumors.Rd', 'man/cim.Rd', 'man/cimDiablo.Rd', 'man/circosPlot.Rd', 'man/colors.Rd', 'man/diverse.16S.Rd', 'man/estim.regul.Rd', 'man/explained_variance.Rd', 'man/image.estim.regul.Rd', 'man/image.tune.rcc.Rd', 'man/imgCor.Rd', 'man/ipca.Rd', 'man/linnerud.Rd', 'man/liver.toxicity.Rd', 'man/logratio.transfo.Rd', 'man/map.Rd', 'man/mat.rank.Rd', 'man/mint.block.pls.Rd', 'man/mint.block.plsda.Rd', 'man/mint.block.spls.Rd', 'man/mint.block.splsda.Rd', 'man/mint.pls.Rd', 'man/mint.plsda.Rd', 'man/mint.spls.Rd', 'man/mint.splsda.Rd', 'man/mixOmics.Rd', 'man/multidrug.Rd', 'man/nearZeroVar.Rd', 'man/network.Rd', 'man/nipals.Rd', 'man/nutrimouse.Rd', 'man/pca.Rd', 'man/pcatune.Rd', 'man/perf.Rd', 'man/plot.perf.Rd', 'man/plot.rcc.Rd', 'man/plotArrow.Rd', 'man/plotDiablo.Rd', 'man/plotIndiv.Rd', 'man/plotLoadings.Rd', 'man/plotVar.Rd', 'man/pls.Rd', 'man/plsda.Rd', 'man/predict.Rd', 'man/print.methods.Rd', 'man/rcc.Rd', 'man/selectVar.Rd', 'man/sipca.Rd', 'man/spca.Rd', 'man/spls.Rd', 'man/splsda.Rd', 'man/srbct.Rd', 'man/stemcells.Rd', 'man/study_split.Rd', 'man/summary.Rd', 'man/tune.Rd', 'man/tune.mint.splsda.Rd', 'man/tune.pca.Rd', 'man/tune.rcc.Rd', 'man/tune.splsda.Rd', 'man/unmap.Rd', 'man/vac18.Rd', 'man/vac18.simulated.Rd', 'man/vip.Rd', 'man/withinVariation.Rd', 'man/wrapper.rgcca.Rd', 'man/wrapper.sgcca.Rd', 'man/yeast.Rd' have the wrong MD5 checksums
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mixOmics'
    finding HTML links ... done
    Koren.16S                               html  
    auroc                                   html  
    background.predict                      html  
    block.pls                               html  
    block.plsda                             html  
    block.spls                              html  
    block.splsda                            html  
    breast.TCGA                             html  
    breast.tumors                           html  
    cim                                     html  
    cimDiablo                               html  
    circosPlot                              html  
    colors                                  html  
    diverse.16S                             html  
    estim.regul                             html  
    explained_variance                      html  
    get.confusion_matrix                    html  
    image.estim.regul                       html  
    image.tune.rcc                          html  
    imgCor                                  html  
    ipca                                    html  
    linnerud                                html  
    liver.toxicity                          html  
    logratio.transfo                        html  
    map                                     html  
    mat.rank                                html  
    mint.block.pls                          html  
    mint.block.plsda                        html  
    mint.block.spls                         html  
    mint.block.splsda                       html  
    mint.pca                                html  
    mint.pls                                html  
    mint.plsda                              html  
    mint.spls                               html  
    mint.splsda                             html  
    mixOmics                                html  
    multidrug                               html  
    nearZeroVar                             html  
    network                                 html  
    nipals                                  html  
    nutrimouse                              html  
    pca                                     html  
    pcatune                                 html  
    perf                                    html  
    plot.perf                               html  
    plot.rcc                                html  
    plot.tune                               html  
    plotArrow                               html  
    plotDiablo                              html  
    plotIndiv                               html  
    plotLoadings                            html  
    plotVar                                 html  
    pls                                     html  
    plsda                                   html  
    predict                                 html  
    print.methods                           html  
    rcc                                     html  
    selectVar                               html  
    sipca                                   html  
    spca                                    html  
    spls                                    html  
    splsda                                  html  
    srbct                                   html  
    stemcells                               html  
    study_split                             html  
    summary                                 html  
    tune                                    html  
    tune.block.splsda                       html  
    tune.mint.splsda                        html  
    tune.pca                                html  
    tune.rcc                                html  
    tune.spls                               html  
    tune.splsda                             html  
    tune.splslevel                          html  
    unmap                                   html  
    vac18                                   html  
    vac18.simulated                         html  
    vip                                     html  
    withinVariation                         html  
    wrapper.rgcca                           html  
    wrapper.sgcca                           html  
    yeast                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'mixOmics' ...
files 'R/MCVfold.R', 'R/multilevel.R', 'R/plotContrib.R', 'R/scatterutil.R', 'R/tune.multilevel.R', 'man/multilevel.Rd', 'man/plotContrib.Rd', 'man/scatterutil.Rd', 'man/tune.multilevel.Rd' are missing
files 'DESCRIPTION', 'NAMESPACE', 'NEWS', 'R/LOGOCV.R', 'R/bin.color.R', 'R/block.pls.R', 'R/block.plsda.R', 'R/block.spls.R', 'R/block.splsda.R', 'R/check_entry.R', 'R/cim.R', 'R/cimDiablo.R', 'R/circosPlot.R', 'R/color.GreenRed.R', 'R/color.jet.R', 'R/color.mixo.R', 'R/color.spectral.R', 'R/explained_variance.R', 'R/ica.def.par.R', 'R/image.tune.rcc.R', 'R/imageMap.R', 'R/imgCor.R', 'R/internal_graphicModule.R', 'R/internal_mint.block.R', 'R/internal_mint.block_helpers.R', 'R/internal_predict.DA.R', 'R/internal_wrapper.mint.R', 'R/internal_wrapper.mint.block.R', 'R/mat.rank.R', 'R/mint.block.pls.R', 'R/mint.block.plsda.R', 'R/mint.block.spls.R', 'R/mint.block.splsda.R', 'R/mint.pls.R', 'R/mint.plsda.R', 'R/mint.spls.R', 'R/mint.splsda.R', 'R/mixOmics.R', 'R/network.R', 'R/nipals.R', 'R/pca.R', 'R/pcasvd.R', 'R/perf.R', 'R/perf.diablo.R', 'R/perf.mint.splsda.R', 'R/plot.pca.R', 'R/plot.perf.R', 'R/plotArrow.R', 'R/plotDiablo.R', 'R/plotIndiv.R', 'R/plotIndiv.mint.R', 'R/plotIndiv.pca.R', 'R/plotIndiv.pls.R', 'R/plotIndiv.sgcca.R', 'R/plotLoadings.R', 'R/plotLoadings.mint.spls.R', 'R/plotLoadings.mint.splsda.R', 'R/plotLoadings.spls.R', 'R/plotLoadings.splsda.R', 'R/plotVar.R', 'R/pls.R', 'R/plsda.R', 'R/predict.mint.block.pls.R', 'R/print.methods.R', 'R/selectVar.R', 'R/sipca.R', 'R/spca.R', 'R/spls.R', 'R/splsda.R', 'R/summary.R', 'R/tune.R', 'R/tune.mint.splsda.R', 'R/tune.rcc.R', 'R/tune.splsda.R', 'R/tune.splslevel.R', 'R/vip.R', 'R/wrapper.ilr.R', 'R/wrapper.rgcca.R', 'R/wrapper.sgcca.R', 'R/zzz.R', 'data/Koren.16S.rda', 'data/datalist', 'data/diverse.16S.rda', 'data/vac18.simulated.rda', 'man/Koren.16S.Rd', 'man/block.pls.Rd', 'man/block.plsda.Rd', 'man/block.spls.Rd', 'man/block.splsda.Rd', 'man/breast.TCGA.Rd', 'man/breast.tumors.Rd', 'man/cim.Rd', 'man/cimDiablo.Rd', 'man/circosPlot.Rd', 'man/colors.Rd', 'man/diverse.16S.Rd', 'man/estim.regul.Rd', 'man/explained_variance.Rd', 'man/image.estim.regul.Rd', 'man/image.tune.rcc.Rd', 'man/imgCor.Rd', 'man/ipca.Rd', 'man/linnerud.Rd', 'man/liver.toxicity.Rd', 'man/logratio.transfo.Rd', 'man/map.Rd', 'man/mat.rank.Rd', 'man/mint.block.pls.Rd', 'man/mint.block.plsda.Rd', 'man/mint.block.spls.Rd', 'man/mint.block.splsda.Rd', 'man/mint.pls.Rd', 'man/mint.plsda.Rd', 'man/mint.spls.Rd', 'man/mint.splsda.Rd', 'man/mixOmics.Rd', 'man/multidrug.Rd', 'man/nearZeroVar.Rd', 'man/network.Rd', 'man/nipals.Rd', 'man/nutrimouse.Rd', 'man/pca.Rd', 'man/pcatune.Rd', 'man/perf.Rd', 'man/plot.perf.Rd', 'man/plot.rcc.Rd', 'man/plotArrow.Rd', 'man/plotDiablo.Rd', 'man/plotIndiv.Rd', 'man/plotLoadings.Rd', 'man/plotVar.Rd', 'man/pls.Rd', 'man/plsda.Rd', 'man/predict.Rd', 'man/print.methods.Rd', 'man/rcc.Rd', 'man/selectVar.Rd', 'man/sipca.Rd', 'man/spca.Rd', 'man/spls.Rd', 'man/splsda.Rd', 'man/srbct.Rd', 'man/stemcells.Rd', 'man/study_split.Rd', 'man/summary.Rd', 'man/tune.Rd', 'man/tune.mint.splsda.Rd', 'man/tune.pca.Rd', 'man/tune.rcc.Rd', 'man/tune.splsda.Rd', 'man/unmap.Rd', 'man/vac18.Rd', 'man/vac18.simulated.Rd', 'man/vip.Rd', 'man/withinVariation.Rd', 'man/wrapper.rgcca.Rd', 'man/wrapper.sgcca.Rd', 'man/yeast.Rd' have the wrong MD5 checksums
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mixOmics' as mixOmics_6.6.2.zip
* DONE (mixOmics)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'mixOmics' successfully unpacked and MD5 sums checked
In R CMD INSTALL