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BUILD report for maftools on tokay1

This page was generated on 2019-04-13 11:26:54 -0400 (Sat, 13 Apr 2019).

Package 866/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maftools 1.8.0
Anand Mayakonda
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/maftools
Branch: RELEASE_3_8
Last Commit: 4078933
Last Changed Date: 2018-10-30 11:42:02 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: maftools
Version: 1.8.0
Command: chmod a+r maftools -R && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data maftools
StartedAt: 2019-04-12 23:00:40 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 23:03:00 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 140.0 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   chmod a+r maftools -R && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data maftools
###
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* checking for file 'maftools/DESCRIPTION' ... OK
* preparing 'maftools':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: maftools
reading maf..
silent variants: 475
Summarizing..
Gene Summary..
Checking clinical data..
Done !
reading maf..
silent variants: 475
Processing Gistic files..
Processing amp_genes.conf_99.txt..
Processing del_genes.conf_99.txt..
Processing scores.gistic..
Summarizing samples..
Summarizing..
Gene Summary..
Checking clinical data..
NOTE: Missing clinical data! It is strongly recommended to provide clinical data associated with samples if available.
Done !
Removed 3 mutations for which AA position was not available
Summary..
Quitting from lines 269-270 (maftools.Rmd) 
Error: processing vignette 'maftools.Rmd' failed with diagnostics:
Supplied 2 items to be assigned to 24 items of column 'color'. The RHS length must either be 1 (single values are ok) or match the LHS length exactly. If you wish to 'recycle' the RHS please use rep() explicitly to make this intent clear to readers of your code.
Execution halted