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CHECK report for interactiveDisplayBase on malbec1

This page was generated on 2019-04-16 11:50:43 -0400 (Tue, 16 Apr 2019).

Package 783/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
interactiveDisplayBase 1.20.0
Shawn Balcome
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/interactiveDisplayBase
Branch: RELEASE_3_8
Last Commit: f40912c
Last Changed Date: 2018-10-30 11:41:54 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: interactiveDisplayBase
Version: 1.20.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:interactiveDisplayBase.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings interactiveDisplayBase_1.20.0.tar.gz
StartedAt: 2019-04-16 00:49:45 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 00:50:07 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 22.5 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: interactiveDisplayBase.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:interactiveDisplayBase.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings interactiveDisplayBase_1.20.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/interactiveDisplayBase.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘interactiveDisplayBase/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘interactiveDisplayBase’ version ‘1.20.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘interactiveDisplayBase’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... WARNING
'loadNamespace' or 'requireNamespace' call not declared from: ‘BiocManager’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.usePackage: no visible global function definition for
  ‘install.packages’
.usePackage: no visible global function definition for
  ‘installed.packages’
Undefined global functions or variables:
  install.packages installed.packages
Consider adding
  importFrom("utils", "install.packages", "installed.packages")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.8-bioc/meat/interactiveDisplayBase.Rcheck/00check.log’
for details.



Installation output

interactiveDisplayBase.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL interactiveDisplayBase
###
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘interactiveDisplayBase’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (interactiveDisplayBase)

Tests output


Example timings

interactiveDisplayBase.Rcheck/interactiveDisplayBase-Ex.timings

nameusersystemelapsed
dot_runApp0.0000.0000.001
interactiveDisplayBase-methods000