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BUILD BIN report for flowMatch on tokay1

This page was generated on 2019-04-13 11:23:26 -0400 (Sat, 13 Apr 2019).

Package 537/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowMatch 1.18.1
Ariful Azad
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/flowMatch
Branch: RELEASE_3_8
Last Commit: 85c1c5e
Last Changed Date: 2019-01-04 13:32:32 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowMatch
Version: 1.18.1
Command: rm -rf flowMatch.buildbin-libdir && mkdir flowMatch.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowMatch.buildbin-libdir flowMatch_1.18.1.tar.gz
StartedAt: 2019-04-13 07:15:58 -0400 (Sat, 13 Apr 2019)
EndedAt: 2019-04-13 07:16:44 -0400 (Sat, 13 Apr 2019)
EllapsedTime: 45.6 seconds
RetCode: 0
Status:  OK  
PackageFile: flowMatch_1.18.1.zip
PackageFileSize: 4.433 MiB

Command output

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### Running command:
###
###   rm -rf flowMatch.buildbin-libdir && mkdir flowMatch.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowMatch.buildbin-libdir flowMatch_1.18.1.tar.gz
###
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install for i386

* installing *source* package 'flowMatch' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c BipartiteGraph.cpp -o BipartiteGraph.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c MinWghtEdgCoverBipartite.cpp -o MinWghtEdgCoverBipartite.o
MinWghtEdgCoverBipartite.cpp: In function 'void update_height(mclust&, std::vector<std::vector<templatePair> >, std::vector<std::vector<BipartiteGraph> >, double)':
MinWghtEdgCoverBipartite.cpp:271:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i=0; i<tree.height.size(); i++)
                ^
MinWghtEdgCoverBipartite.cpp: In function 'void computeDegConsistencyNew(std::vector<std::vector<templatePair> >&, std::vector<std::vector<BipartiteGraph> >&, double, double)':
MinWghtEdgCoverBipartite.cpp:487:10: warning: variable 'delta_cx_cy' set but not used [-Wunused-but-set-variable]
      int delta_cx_cy  = 0;
          ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c flowMatch.cpp -o flowMatch.o
flowMatch.cpp: In function 'Rcpp::List computeMEC(Rcpp::NumericMatrix, double)':
flowMatch.cpp:43:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i=0; i<mec.sCoverVecVec.size(); i++)
                ^
flowMatch.cpp:45:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j<mec.sCoverVecVec[i].size(); j++)
                 ^
flowMatch.cpp:53:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i=0; i<mec.tCoverVecVec.size(); i++)
                ^
flowMatch.cpp:55:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j<mec.tCoverVecVec[i].size(); j++)
                 ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o flowMatch.dll tmp.def BipartiteGraph.o MinWghtEdgCoverBipartite.o flowMatch.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/flowMatch.buildbin-libdir/flowMatch/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'flowMatch'
    finding HTML links ... done
    Cluster-class                           html  
    ClusterMatch-class                      html  
    ClusteredSample-class                   html  
    MetaCluster-class                       html  
    Template-class                          html  
    create.template                         html  
    dist.cluster                            html  
    dist.matrix                             html  
    dist.sample                             html  
    dist.template                           html  
    flowMatch-package                       html  
    mahalanobis.dist                        html  
    match.clusters                          html  
    symmetric.KL                            html  
    template.tree                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'flowMatch' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c BipartiteGraph.cpp -o BipartiteGraph.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c MinWghtEdgCoverBipartite.cpp -o MinWghtEdgCoverBipartite.o
MinWghtEdgCoverBipartite.cpp: In function 'void update_height(mclust&, std::vector<std::vector<templatePair> >, std::vector<std::vector<BipartiteGraph> >, double)':
MinWghtEdgCoverBipartite.cpp:271:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i=0; i<tree.height.size(); i++)
                ^
MinWghtEdgCoverBipartite.cpp: In function 'void computeDegConsistencyNew(std::vector<std::vector<templatePair> >&, std::vector<std::vector<BipartiteGraph> >&, double, double)':
MinWghtEdgCoverBipartite.cpp:487:10: warning: variable 'delta_cx_cy' set but not used [-Wunused-but-set-variable]
      int delta_cx_cy  = 0;
          ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c flowMatch.cpp -o flowMatch.o
flowMatch.cpp: In function 'Rcpp::List computeMEC(Rcpp::NumericMatrix, double)':
flowMatch.cpp:43:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i=0; i<mec.sCoverVecVec.size(); i++)
                ^
flowMatch.cpp:45:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j<mec.sCoverVecVec[i].size(); j++)
                 ^
flowMatch.cpp:53:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i=0; i<mec.tCoverVecVec.size(); i++)
                ^
flowMatch.cpp:55:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int j=0; j<mec.tCoverVecVec[i].size(); j++)
                 ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o flowMatch.dll tmp.def BipartiteGraph.o MinWghtEdgCoverBipartite.o flowMatch.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/flowMatch.buildbin-libdir/flowMatch/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowMatch' as flowMatch_1.18.1.zip
* DONE (flowMatch)
In R CMD INSTALL
In R CMD INSTALL