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INSTALL report for flowCyBar on tokay1

This page was generated on 2019-04-13 11:23:44 -0400 (Sat, 13 Apr 2019).

Package 532/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowCyBar 1.18.1
Joachim Schumann
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/flowCyBar
Branch: RELEASE_3_8
Last Commit: f2ac74c
Last Changed Date: 2019-01-04 13:32:06 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowCyBar
Version: 1.18.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/flowCyBar_1.18.1.tar.gz && rm -rf flowCyBar.buildbin-libdir && mkdir flowCyBar.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowCyBar.buildbin-libdir flowCyBar_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL flowCyBar_1.18.1.zip && rm flowCyBar_1.18.1.tar.gz flowCyBar_1.18.1.zip
StartedAt: 2019-04-12 19:00:12 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:00:34 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 21.5 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/flowCyBar_1.18.1.tar.gz && rm -rf flowCyBar.buildbin-libdir && mkdir flowCyBar.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowCyBar.buildbin-libdir flowCyBar_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL flowCyBar_1.18.1.zip && rm flowCyBar_1.18.1.tar.gz flowCyBar_1.18.1.zip
###
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install for i386

* installing *source* package 'flowCyBar' ...
files 'build/vignette.rds', 'inst/doc/flowCyBar-manual.R', 'inst/doc/flowCyBar-manual.Rnw', 'inst/doc/flowCyBar-manual.bib', 'inst/doc/flowCyBar-manual.pdf' are missing
files 'DESCRIPTION', 'R/correlation.R', 'R/cybar_plot.R', 'R/nmds.R', 'R/normalize.R', 'man/correlation.Rd', 'man/cybar_plot.Rd', 'man/flowCyBar-package.Rd', 'man/nmds.Rd', 'man/normalize.Rd', 'vignettes/flowCyBar-manual.Rnw' have the wrong MD5 checksums
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'flowCyBar'
    finding HTML links ... done
    Abiotic_data_sample                     html  
    Cell_number_sample                      html  
    Corr_data_sample                        html  
    correlation                             html  
    cybar_plot                              html  
    flowCyBar-package                       html  
    nmds                                    html  
    normalize                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'flowCyBar' ...
files 'build/vignette.rds', 'inst/doc/flowCyBar-manual.R', 'inst/doc/flowCyBar-manual.Rnw', 'inst/doc/flowCyBar-manual.bib', 'inst/doc/flowCyBar-manual.pdf' are missing
files 'DESCRIPTION', 'R/correlation.R', 'R/cybar_plot.R', 'R/nmds.R', 'R/normalize.R', 'man/correlation.Rd', 'man/cybar_plot.Rd', 'man/flowCyBar-package.Rd', 'man/nmds.Rd', 'man/normalize.Rd', 'vignettes/flowCyBar-manual.Rnw' have the wrong MD5 checksums
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowCyBar' as flowCyBar_1.18.1.zip
* DONE (flowCyBar)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'flowCyBar' successfully unpacked and MD5 sums checked
In R CMD INSTALL