Back to Multiple platform build/check report for BioC 3.8
ABCD[E]FGHIJKLMNOPQRSTUVWXYZ

INSTALL report for epivizr on tokay1

This page was generated on 2019-04-13 11:23:16 -0400 (Sat, 13 Apr 2019).

Package 480/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
epivizr 2.12.0
Hector Corrada Bravo
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/epivizr
Branch: RELEASE_3_8
Last Commit: 2fdb68c
Last Changed Date: 2018-10-30 11:41:52 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: epivizr
Version: 2.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/epivizr_2.12.0.tar.gz && rm -rf epivizr.buildbin-libdir && mkdir epivizr.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizr.buildbin-libdir epivizr_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL epivizr_2.12.0.zip && rm epivizr_2.12.0.tar.gz epivizr_2.12.0.zip
StartedAt: 2019-04-12 20:13:54 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:14:40 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 46.0 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/epivizr_2.12.0.tar.gz && rm -rf epivizr.buildbin-libdir && mkdir epivizr.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizr.buildbin-libdir epivizr_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL epivizr_2.12.0.zip && rm epivizr_2.12.0.tar.gz epivizr_2.12.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  932k  100  932k    0     0  21.4M      0 --:--:-- --:--:-- --:--:-- 23.3M

install for i386

* installing *source* package 'epivizr' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'epivizr'
    finding HTML links ... done
    EpivizApp-class                         html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/EpivizApp-class.Rd:14: file link 'EpivizServer' in package 'epivizrServer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/EpivizApp-class.Rd:16: file link 'EpivizDataMgr' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/EpivizApp-class.Rd:33: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/EpivizApp-class.Rd:57: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/EpivizApp-class.Rd:58: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/EpivizApp-class.Rd:67: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
    EpivizChart-class                       html  
    EpivizChartMgr-class                    html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/EpivizChartMgr-class.Rd:33: file link 'EpivizServer' in package 'epivizrServer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/EpivizChartMgr-class.Rd:55: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/EpivizChartMgr-class.Rd:56: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/EpivizChartMgr-class.Rd:60: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/EpivizChartMgr-class.Rd:121: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/EpivizChartMgr-class.Rd:126: file link 'EpivizMeasurement' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/EpivizChartMgr-class.Rd:128: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
    restartEpiviz                           html  
    show-EpivizChart-method                 html  
    startEpiviz                             html  
    tcga_colon_blocks                       html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/tcga_colon_blocks.Rd:7: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/tcga_colon_blocks.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    tcga_colon_curves                       html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/tcga_colon_curves.Rd:7: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/tcga_colon_curves.Rd:25: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    tcga_colon_expression                   html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/tcga_colon_expression.Rd:23: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/tcga_colon_expression.Rd:7: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpMvaZFu/R.INSTALL2454142247ed/epivizr/man/tcga_colon_expression.Rd:20: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'epivizr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'epivizr' as epivizr_2.12.0.zip
* DONE (epivizr)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'epivizr' successfully unpacked and MD5 sums checked
In R CMD INSTALL