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CHECK report for enrichplot on tokay1

This page was generated on 2019-04-13 11:28:51 -0400 (Sat, 13 Apr 2019).

Package 473/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
enrichplot 1.2.0
Guangchuang Yu
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/enrichplot
Branch: RELEASE_3_8
Last Commit: 2eeaafb
Last Changed Date: 2018-10-30 11:42:08 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ WARNINGS ] OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: enrichplot
Version: 1.2.0
Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:enrichplot.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings enrichplot_1.2.0.tar.gz
StartedAt: 2019-04-13 02:03:50 -0400 (Sat, 13 Apr 2019)
EndedAt: 2019-04-13 02:07:37 -0400 (Sat, 13 Apr 2019)
EllapsedTime: 226.2 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: enrichplot.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:enrichplot.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings enrichplot_1.2.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/enrichplot.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'enrichplot/DESCRIPTION' ... OK
* this is package 'enrichplot' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'enrichplot' can be installed ... WARNING
Found the following significant warnings:
  Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpiu6nIi/R.INSTALL9407070bb1/enrichplot/man/reexports.Rd:18: file link 'ggtitle' in package 'ggplot2' does not exist and so has been treated as a topic
See 'C:/Users/biocbuild/bbs-3.8-bioc/meat/enrichplot.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  'C:/Users/biocbuild/bbs-3.8-bioc/meat/enrichplot.Rcheck/00check.log'
for details.



Installation output

enrichplot.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/enrichplot_1.2.0.tar.gz && rm -rf enrichplot.buildbin-libdir && mkdir enrichplot.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=enrichplot.buildbin-libdir enrichplot_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL enrichplot_1.2.0.zip && rm enrichplot_1.2.0.tar.gz enrichplot_1.2.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 23849  100 23849    0     0   405k      0 --:--:-- --:--:-- --:--:--  439k

install for i386

* installing *source* package 'enrichplot' ...
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'enrichplot'
    finding HTML links ... done
    barplot.enrichResult                    html  
    cnetplot                                html  
    color_palette                           html  
    dotplot                                 html  
    emapplot                                html  
    fortify.enrichResult                    html  
    ggtable                                 html  
    goplot                                  html  
    gsInfo                                  html  
    gseaplot                                html  
    gseaplot2                               html  
    gsearank                                html  
    heatplot                                html  
    list2graph                              html  
    pmcplot                                 html  
    reexports                               html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpiu6nIi/R.INSTALL9407070bb1/enrichplot/man/reexports.Rd:18: file link 'ggtitle' in package 'ggplot2' does not exist and so has been treated as a topic
    ridgeplot                               html  
    upsetplot-methods                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'enrichplot' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'enrichplot' as enrichplot_1.2.0.zip
* DONE (enrichplot)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'enrichplot' successfully unpacked and MD5 sums checked
In R CMD INSTALL

Tests output


Example timings

enrichplot.Rcheck/examples_i386/enrichplot-Ex.timings

nameusersystemelapsed
barplot.enrichResult0.990.031.01
cnetplot1.360.091.64
color_palette000
dotplot0.970.101.06
emapplot1.560.031.60
gseaplot3.270.083.29
heatplot0.970.000.97
ridgeplot2.920.012.94
upsetplot-methods1.140.031.17

enrichplot.Rcheck/examples_x64/enrichplot-Ex.timings

nameusersystemelapsed
barplot.enrichResult0.920.070.98
cnetplot1.400.001.41
color_palette000
dotplot1.110.031.14
emapplot2.020.002.02
gseaplot3.060.033.06
heatplot1.280.001.28
ridgeplot2.110.002.11
upsetplot-methods1.220.001.22